C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) B receptor, 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107749 Gabbr2-001 ENSMUSG00000039809 10090 - 4:46662318-46991873 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107749 0.051±0.02 0.043±0.03 0.018±0.00 22.558±22.77 0.033±0.01 0.034±0.02 0.025±0.01 0.047±0.02 1.538±1.53 0.014±0.01 0.013±0.00 0.068±0.02 0.085±0.06 0.153±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029Z CIL_00029Z_0002 CGP 4:46604390-46991873
CIL_000202 CIL_000202_0002 CGP 4:46662318-47057306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004965 IEA G-protein coupled GABA receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005887 ISS integral component of plasma membrane
GO:0007214 ISS gamma-aminobutyric acid signaling pathway
GO:0030054 IEA cell junction
GO:0038039 ISS G-protein coupled receptor heterodimeric complex
GO:0043005 IDA neuron projection
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086617 gabbr2-001 protein_coding Danio_rerio 0 1410
ENST00000259455 GABBR2-001 protein_coding Homo_sapiens 0 4047
ENST00000477471 GABBR2-002 processed_transcript Homo_sapiens 0 462

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