C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108346 Ythdf3-202 ENSMUSG00000047213 10090 + 3:16183183-16217035 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000108346
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000108346 4.495±2.30 23.847±2.82 4.709±0.57 1.560±0.56 9.080±6.55 10.847±3.26 0.975±0.01 5.093±2.02 4.539±2.28 5.397±2.76 1.272±0.15 17.913±11.64 3.134±1.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:1990247 ISS N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122294 ythdf3-001 protein_coding Danio_rerio 0 531
ENST00000492781 GS1-388B5.2-001 processed_pseudogene Homo_sapiens 2e-37 158
ENST00000517371 YTHDF3-010 protein_coding Homo_sapiens 0 3040
ENST00000518373 YTHDF3-013 processed_transcript Homo_sapiens 0 355
ENST00000519428 YTHDF3-007 retained_intron Homo_sapiens 0 361
ENST00000522282 YTHDF3-004 retained_intron Homo_sapiens 0 209
ENST00000539294 YTHDF3-001 protein_coding Homo_sapiens 0 5858
ENST00000612880 YTHDF3-008 protein_coding Homo_sapiens 0 588
ENST00000613853 YTHDF3-012 protein_coding Homo_sapiens 0 348
ENST00000615676 YTHDF3-003 nonsense_mediated_decay Homo_sapiens 0 5858
ENST00000617200 YTHDF3-201 protein_coding Homo_sapiens 0 5858
ENST00000617952 YTHDF3-005 protein_coding Homo_sapiens 2.94273e-44 182
ENST00000619337 YTHDF3-011 protein_coding Homo_sapiens 0 542
ENST00000621413 YTHDF3-014 protein_coding Homo_sapiens 0 2966
ENST00000621820 YTHDF3-002 protein_coding Homo_sapiens 0 3201
ENST00000621890 YTHDF3-006 protein_coding Homo_sapiens 0 3304
ENST00000621957 YTHDF3-015 protein_coding Homo_sapiens 0 3214
ENST00000623280 YTHDF3-202 protein_coding Homo_sapiens 0 5858

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