C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuroligin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108634 Nlgn2-001 ENSMUSG00000051790 10090 - 11:69823122-69837784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108634 7.916±3.05 7.150±1.56 3.095±0.28 20.177±2.89 3.470±1.82 1.946±0.62 0.330±0.17 1.116±0.00 0.341±0.19 5.448±0.69 0.676±0.23 7.093±1.03 0.979±0.51 0.561±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032K CIL_00032K_0002 CGP 11:69823122-69839618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001966 ISS thigmotaxis
GO:0002087 IGI regulation of respiratory gaseous exchange by neurological system process
GO:0004872 IBA receptor activity
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0007158 ISS neuron cell-cell adhesion
GO:0007416 ISS synapse assembly
GO:0007630 ISS jump response
GO:0009986 ISS cell surface
GO:0019233 IMP sensory perception of pain
GO:0030054 IEA cell junction
GO:0032230 IMP positive regulation of synaptic transmission, GABAergic
GO:0035176 ISS social behavior
GO:0035418 IDA protein localization to synapse
GO:0035641 IMP locomotory exploration behavior
GO:0042043 IBA neurexin family protein binding
GO:0045202 IDA synapse
GO:0045211 IEA postsynaptic membrane
GO:0050804 IGI regulation of synaptic transmission
GO:0050808 ISS synapse organization
GO:0050839 IPI cell adhesion molecule binding
GO:0050885 IMP neuromuscular process controlling balance
GO:0051965 ISS positive regulation of synapse assembly
GO:0051968 IMP positive regulation of synaptic transmission, glutamatergic
GO:0060076 IC excitatory synapse
GO:0060077 IC inhibitory synapse
GO:0072553 ISS terminal button organization
GO:0097104 IDA postsynaptic membrane assembly
GO:0097105 IDA presynaptic membrane assembly
GO:0097116 IDA gephyrin clustering
GO:0097119 IDA postsynaptic density protein 95 clustering
GO:0097151 IMP positive regulation of inhibitory postsynaptic membrane potential
GO:2000311 IMP regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity
GO:2000463 IMP positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000112484 nlgn2b-201 protein_coding Danio_rerio 0 913
ENSDART00000126074 nlgn3a-201 protein_coding Danio_rerio 0 507
ENSDART00000090691 nlgn3a-002 protein_coding Danio_rerio 0 507
ENSDART00000145750 nlgn3a-001 protein_coding Danio_rerio 0 507
ENST00000302926 NLGN2-001 protein_coding Homo_sapiens 0 3755
ENST00000570940 NLGN2-005 protein_coding Homo_sapiens 0 688
ENST00000572893 NLGN2-004 processed_transcript Homo_sapiens 0 355
ENST00000575301 NLGN2-002 protein_coding Homo_sapiens 0 4872

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