C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A/B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109103 Hnrnpab-003 ENSMUSG00000020358 10090 - 11:51601174-51606847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109103 77.751±46.71 379.422±73.79 65.510±10.16 153.180±19.22 197.186±122.48 205.355±103.36 25.424±4.24 60.727±40.42 121.807±76.77 153.532±43.32 29.426±1.45 412.635±208.33 307.389±378.45 90.682±82.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 IPI RNA binding
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355836 HNRNPAB-003 protein_coding Homo_sapiens 0 981
ENST00000358344 HNRNPAB-001 protein_coding Homo_sapiens 0 1561
ENST00000406003 HNRNPABP1-001 processed_pseudogene Homo_sapiens 0 652
ENST00000504796 HNRNPAB-009 retained_intron Homo_sapiens 0 418
ENST00000504898 HNRNPAB-008 protein_coding Homo_sapiens 0 1520
ENST00000506259 HNRNPAB-004 protein_coding Homo_sapiens 0 941
ENST00000506339 HNRNPAB-005 protein_coding Homo_sapiens 0 1613
ENST00000514633 HNRNPAB-002 protein_coding Homo_sapiens 0 981
ENST00000515193 HNRNPAB-006 protein_coding Homo_sapiens 0 987
ENST00000615932 HNRNPAB-201 protein_coding Homo_sapiens 0 1480

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