C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109241 Snx18-201 ENSMUSG00000042364 10090 - 13:113592180-113618564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109241 13.382±3.74 13.361±1.92 13.691±3.21 3.434±1.07 13.646±4.67 5.757±2.18 4.882±0.59 12.939±0.66 4.117±0.62 15.458±1.82 2.415±0.26 28.843±11.26 8.917±3.09 1.171±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004V7 CIL_0004V7_0002 CGP 13:113317084-113618564

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IEA mitotic cytokinesis
GO:0005515 IPI protein binding
GO:0005546 IEA phosphatidylinositol-4,5-bisphosphate binding
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006897 IEA endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0016023 IBA cytoplasmic membrane-bounded vesicle
GO:0016197 IEA endosomal transport
GO:0030136 IEA clathrin-coated vesicle
GO:0030426 IDA growth cone
GO:0030659 IEA cytoplasmic vesicle membrane
GO:0031234 IEA extrinsic component of cytoplasmic side of plasma membrane
GO:0035091 IDA phosphatidylinositol binding
GO:0036089 IEA cleavage furrow formation
GO:0043025 IDA neuronal cell body
GO:0043547 IEA positive regulation of GTPase activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326277 SNX18-001 protein_coding Homo_sapiens 0 2036
ENST00000343017 SNX18-201 protein_coding Homo_sapiens 0 2036
ENST00000381410 SNX18-002 protein_coding Homo_sapiens 0 2935
ENST00000416712 RP11-241F15.9-001 processed_pseudogene Homo_sapiens 6e-23 110
ENST00000429308 SNX18P14-001 processed_pseudogene Homo_sapiens 1e-34 150
ENST00000565670 SNX18P3-002 processed_transcript Homo_sapiens 0 224
ENST00000619873 SNX18P5-001 unprocessed_pseudogene Homo_sapiens 0 233

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