C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109521 Polr2c-201 ENSMUSG00000031783 10090 + 8:94857450-94864242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109521 30.239±8.69 29.348±5.10 27.236±3.49 31.262±13.49 33.700±5.28 33.328±4.38 42.326±1.72 38.856±1.93 28.182±12.59 32.526±6.42 31.103±4.92 35.769±7.78 22.368±9.51 16.650±7.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZD CIL_0003ZD_0002 CGP 8:94838321-94864242
CIL_000163 CIL_000163_0002 CGP 8:94857450-94876312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005665 IBA DNA-directed RNA polymerase II, core complex
GO:0005737 IDA cytoplasm
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0015630 IEA microtubule cytoskeleton
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219252 POLR2C-001 protein_coding Homo_sapiens 0 1122
ENST00000340099 DOK4-001 protein_coding Homo_sapiens 0 257
ENST00000562599 POLR2C-005 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000562953 POLR2C-006 retained_intron Homo_sapiens 0 833
ENST00000563115 POLR2C-002 retained_intron Homo_sapiens 0 538
ENST00000563589 POLR2C-003 retained_intron Homo_sapiens 0 311
ENST00000564651 POLR2C-008 processed_transcript Homo_sapiens 0 835
ENST00000566936 DOK4-002 protein_coding Homo_sapiens 0 289
ENST00000567982 POLR2C-007 retained_intron Homo_sapiens 0 603

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