C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide C, 33kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219252 POLR2C-001 ENSG00000102978 9606 + 16:57462387-57472010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219252 16.906±0.00 23.154±0.00 4.280±0.00 17.777±8.02 12.430±6.97 13.523±4.62 24.108±0.00 21.703±13.61 12.717±7.54 13.169±5.38 15.142±9.91 26.514±12.51 28.176±5.90 27.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZD CIL_0003ZD_0001 CGP 16:57447425-57472010
CIL_000163 CIL_000163_0001 CGP 16:57462387-57487327

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0016032 TAS viral process
GO:0046983 IEA protein dimerization activity
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109521 Polr2c-201 protein_coding Mus_musculus 0 1122
ENSMUST00000121861 Gm11993-001 processed_pseudogene Mus_musculus 0 1033
ENSMUST00000046461 Dok4-201 protein_coding Mus_musculus 3e-26 124

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