C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Src-like-adaptor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109561 Sla2-001 ENSMUSG00000027636 10090 - 2:156872922-156887192 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109561
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109561 5.358±0.56 6.114±0.51 5.507±1.08 8.250±2.23 2.559±0.00 4.826±1.13 6.582±1.61 8.452±2.94 5.289±1.95 7.793±0.91 12.058±3.37 12.351±3.60 1.562±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000304 CIL_000304_0003 CGP 2:156872457-156992056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0005070 ISS SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005770 IDA late endosome
GO:0005886 IDA plasma membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0042110 IDA T cell activation
GO:0047485 ISS protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262866 SLA2-001 protein_coding Homo_sapiens 0 737
ENST00000342422 C20orf24-003 protein_coding Homo_sapiens 0 392
ENST00000344795 C20orf24-005 protein_coding Homo_sapiens 0 392
ENST00000360672 SLA2-002 protein_coding Homo_sapiens 0 579
ENST00000373852 C20orf24-001 protein_coding Homo_sapiens 0 394
ENST00000483815 C20orf24-002 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000492721 C20orf24-006 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000494506 C20orf24-004 retained_intron Homo_sapiens 0 392
ENST00000558530 TGIF2-C20orf24-001 protein_coding Homo_sapiens 0 272

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