C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TGIF2-C20orf24 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558530 TGIF2-C20orf24-001 ENSG00000259399 9606 + 20:36574553-36612384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000558530
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000558530 15.064±0.00 28.644±0.00 12.005±0.00 33.607±0.00 18.689±0.00 16.232±0.00 24.624±0.00 55.151±0.00 23.344±0.00 20.933±0.00 41.472±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RT CIL_0006RT_0002 CGP 20:36541484-36593950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005739 IEA mitochondrion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029165 1110008F13Rik-001 protein_coding Mus_musculus 0 588
ENSMUST00000152551 1110008F13Rik-003 processed_transcript Mus_musculus 0 440
ENSMUST00000150078 Tgif2-003 nonsense_mediated_decay Mus_musculus 0 291
ENSMUST00000126767 1110008F13Rik-004 processed_transcript Mus_musculus 0 274
ENSMUST00000109561 Sla2-001 protein_coding Mus_musculus 0 272
ENSMUST00000029164 Sla2-002 protein_coding Mus_musculus 0 272
ENSMUST00000073352 Tgif2-002 protein_coding Mus_musculus 0 270
ENSMUST00000081335 Tgif2-001 protein_coding Mus_musculus 0 270
ENSMUST00000121213 Gm12605-001 unprocessed_pseudogene Mus_musculus 0 195
ENSMUST00000152942 1110008F13Rik-002 retained_intron Mus_musculus 7e-34 148

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