C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000304_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020788-ENSDARG00000010052 CGP 7955 23:14920211-15101965
GeneTranscriptPositionBiotype
ENSDARG00000010052 (ndrg3b)
N-myc downstream regulated family member 3b 		ENSDART00000010258 (ndrg3b-201) 14944541-15049091 protein_coding
ENSDART00000134979 (ndrg3b-004) 14945463-14959335 retained_intron
ENSDART00000138197 (ndrg3b-009) 15022190-15101965 processed_transcript
ENSDART00000139542 (ndrg3b-003) 14945653-14970592 processed_transcript
ENSDART00000143553 (ndrg3b-005) 14945211-14959022 processed_transcript
ENSDART00000144579 (ndrg3b-008) 15022098-15101965 retained_intron
ENSDART00000144965 (ndrg3b-001) 14944535-15049091 protein_coding
ENSDART00000145164 (ndrg3b-002) 14945723-14979126 processed_transcript
ENSDART00000147636 (ndrg3b-006) 14945122-14958828 retained_intron
ENSDART00000147799 (ndrg3b-007) 14973677-15101909 protein_coding
ENSDARG00000020788 (sla2)
Src-like-adaptor 2 		ENSDART00000005072 (sla2-201) 14920216-14937440 protein_coding
ENSDART00000134659 (sla2-001) 14920211-14942617 protein_coding
ENSDART00000146900 (sla2-002) 14931397-14937424 retained_intron
CIL_000304_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101082-ENSG00000101079 CGP 9606 20:36612318-36746078
GeneTranscriptPositionBiotype
ENSG00000101079 (NDRG3)
NDRG family member 3 		ENST00000349004 (NDRG3-001) 36651766-36746078 protein_coding
ENST00000359675 (NDRG3-005) 36651766-36746067 protein_coding
ENST00000373773 (NDRG3-201) 36652375-36721787 protein_coding
ENST00000373803 (NDRG3-003) 36651766-36746053 protein_coding
ENST00000422536 (NDRG3-004) 36671341-36700675 protein_coding
ENSG00000101082 (SLA2)
Src-like-adaptor 2 		ENST00000262866 (SLA2-001) 36612318-36646216 protein_coding
ENST00000360672 (SLA2-002) 36612519-36645881 protein_coding
ENSG00000227688 (HNRNPA3P2)
heterogeneous nuclear ribonucleoprotein A3 pseudogene 2 		ENST00000451198 (HNRNPA3P2-001) 36620403-36621423 unprocessed_pseudogene
ENSG00000259399 (TGIF2-C20orf24)
TGIF2-C20orf24 readthrough 		ENST00000558530 (TGIF2-C20orf24-001) 36574553-36612384 protein_coding
CIL_000304_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027636-ENSMUSG00000027634 CGP 10090 2:156872457-156992056
GeneTranscriptPositionBiotype
ENSMUSG00000027634 (Ndrg3)
N-myc downstream regulated gene 3 		ENSMUST00000069600 (Ndrg3-002) 156927345-156992043 protein_coding
ENSMUST00000072298 (Ndrg3-001) 156927345-156992056 protein_coding
ENSMUST00000109558 (Ndrg3-004) 156934303-156992035 protein_coding
ENSMUST00000126627 (Ndrg3-003) 156956343-156992047 retained_intron
ENSMUST00000131955 (Ndrg3-005) 156946018-156992000 processed_transcript
ENSMUST00000132748 (Ndrg3-006) 156970061-156991996 processed_transcript
ENSMUST00000140297 (Ndrg3-008) 156938576-156953393 processed_transcript
ENSMUST00000149599 (Ndrg3-009) 156931152-156935005 processed_transcript
ENSMUST00000156491 (Ndrg3-010) 156928403-156944066 processed_transcript
ENSMUST00000156651 (Ndrg3-007) 156948261-156991927 processed_transcript
ENSMUSG00000027636 (Sla2)
Src-like-adaptor 2 		ENSMUST00000029164 (Sla2-002) 156872457-156887078 protein_coding
ENSMUST00000109561 (Sla2-001) 156872922-156887192 protein_coding
ENSMUSG00000027637 (1110008F13Rik)
RIKEN cDNA 1110008F13 gene 		ENSMUST00000029165 (1110008F13Rik-001) 156863128-156873563 protein_coding
ENSMUST00000126767 (1110008F13Rik-004) 156872542-156873396 processed_transcript
ENSMUST00000152551 (1110008F13Rik-003) 156863139-156873398 processed_transcript
ENSMUST00000152942 (1110008F13Rik-002) 156863145-156866987 retained_intron
ENSMUSG00000080880 (Gm14278)
predicted gene 14278 		ENSMUST00000117381 (Gm14278-001) 156888854-156915383 unprocessed_pseudogene
ENSMUSG00000081616 (Gm14247)
predicted gene 14247 		ENSMUST00000120950 (Gm14247-001) 156892882-156893118 processed_pseudogene
ENSMUSG00000083831 (Gm14248)
predicted gene 14248 		ENSMUST00000117790 (Gm14248-001) 156889464-156890007 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000304_0001ENSDARG00000010052ENSDART00000010258ENSDART00000134979ENSDART00000138197ENSDART00000139542ENSDART00000143553ENSDART00000144579ENSDART00000144965ENSDART00000145164ENSDART00000147636ENSDART00000147799ENSDARG00000020788ENSDART00000005072ENSDART00000134659ENSDART00000146900CIL_000304_0002ENSG00000101079ENST00000349004ENST00000359675ENST00000373773ENST00000373803ENST00000422536ENSG00000101082ENST00000262866ENST00000360672ENSG00000227688ENST00000451198ENSG00000259399ENST00000558530CIL_000304_0003ENSMUSG00000027634ENSMUST00000069600ENSMUST00000072298ENSMUST00000109558ENSMUST00000126627ENSMUST00000131955ENSMUST00000132748ENSMUST00000140297ENSMUST00000149599ENSMUST00000156491ENSMUST00000156651ENSMUSG00000027636ENSMUST00000029164ENSMUST00000109561ENSMUSG00000027637ENSMUST00000029165ENSMUST00000126767ENSMUST00000152551ENSMUST00000152942ENSMUSG00000080880ENSMUST00000117381ENSMUSG00000081616ENSMUST00000120950ENSMUSG00000083831ENSMUST00000117790
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000304_0001ENSDARG00000010052ENSDART00000010258ENSDART00000144965ENSDART00000147636ENSDART00000147799ENSDARG00000020788ENSDART00000005072ENSDART00000134659ENSDART00000146900CIL_000304_0002ENSG00000101079ENST00000349004ENST00000359675ENST00000373773ENST00000373803ENST00000422536ENSG00000101082ENST00000262866ENSG00000227688ENST00000451198ENSG00000259399ENST00000558530CIL_000304_0003ENSMUSG00000027634ENSMUST00000069600ENSMUST00000072298ENSMUST00000131955ENSMUST00000140297ENSMUSG00000027636ENSMUST00000029164ENSMUST00000109561ENSMUSG00000027637ENSMUST00000029165ENSMUST00000152551ENSMUST00000152942ENSMUSG00000080880ENSMUST00000117381ENSMUSG00000081616ENSMUST00000120950ENSMUSG00000083831ENSMUST00000117790
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010052 ENSDART00000010258 N/A N/A N/A 68.196±21.79 N/A N/A N/A 7.565±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000143553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144965 N/A N/A N/A 56.806±0.00 N/A N/A N/A 1.115±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000145164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147636 N/A N/A N/A N/A N/A N/A 7.443±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147799 N/A N/A N/A N/A N/A N/A N/A 8.480±0.00 1.683±0.00 N/A N/A N/A N/A N/A
ENSDARG00000020788 ENSDART00000005072 N/A N/A N/A 3.163±1.06 N/A N/A 2.104±0.02 2.271±0.00 0.433±0.00 N/A 1.090±0.00 N/A N/A N/A
ENSDART00000134659 N/A N/A N/A 0.380±0.00 N/A N/A N/A 1.230±0.00 N/A N/A 0.216±0.00 N/A N/A N/A
ENSDART00000146900 N/A N/A N/A N/A N/A N/A 0.776±0.49 0.878±0.35 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101079 ENST00000349004 4.382±0.00 2.215±0.00 N/A 25.183±6.63 4.369±1.09 2.538±0.00 2.860±1.19 3.188±1.68 1.528±1.33 3.427±2.33 0.680±0.48 7.940±2.79 5.979±3.18 N/A
ENST00000359675 N/A 5.055±0.00 N/A 11.119±3.56 N/A 6.383±0.00 2.926±0.00 N/A 0.939±0.00 N/A 2.439±0.00 2.822±0.27 N/A N/A
ENST00000373773 N/A N/A 0.851±0.00 N/A 0.975±0.00 N/A N/A 2.309±0.00 N/A 2.060±0.00 1.192±0.44 5.467±0.00 2.465±0.00 12.944±0.00
ENST00000373803 N/A N/A N/A N/A N/A N/A 2.259±0.00 N/A N/A N/A N/A N/A 1.552±0.00 N/A
ENST00000422536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.713±0.00
ENSG00000101082 ENST00000262866 N/A 6.187±0.00 N/A 2.786±0.00 N/A N/A N/A 2.930±2.53 N/A 3.112±1.77 N/A 6.823±0.00 3.558±0.62 N/A
ENST00000360672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227688 ENST00000451198 0.055±0.00 0.679±0.00 N/A 0.038±0.00 0.147±0.09 0.228±0.21 0.070±0.00 N/A 0.342±0.00 0.148±0.11 N/A 0.104±0.06 0.023±0.00 0.208±0.05
ENSG00000259399 ENST00000558530 15.064±0.00 28.644±0.00 N/A 12.005±0.00 33.607±0.00 18.689±0.00 16.232±0.00 24.624±0.00 55.151±0.00 23.344±0.00 20.933±0.00 N/A N/A 41.472±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027634 ENSMUST00000069600 4.363±0.51 7.605±0.31 3.419±0.29 12.994±5.20 5.635±0.55 8.527±1.77 1.697±0.01 5.856±0.00 2.750±1.07 3.968±0.55 3.437±0.93 4.451±0.57 1.626±0.29 18.577±4.12
ENSMUST00000072298 29.025±5.70 28.497±5.10 13.486±2.07 48.447±14.58 38.896±10.87 23.935±1.84 8.616±0.61 45.179±3.53 16.944±9.32 20.004±1.26 7.066±0.90 24.380±7.01 6.652±1.60 11.453±6.81
ENSMUST00000109558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131955 N/A N/A N/A 144.564±0.00 N/A N/A N/A N/A N/A N/A N/A 26.950±0.00 8.402±0.06 34.308±0.00
ENSMUST00000132748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 64.106±5.27
ENSMUST00000149599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027636 ENSMUST00000029164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.818±1.73
ENSMUST00000109561 5.358±0.56 N/A 6.114±0.51 5.507±1.08 8.250±2.23 2.559±0.00 4.826±1.13 6.582±1.61 8.452±2.94 5.289±1.95 7.793±0.91 12.058±3.37 12.351±3.60 1.562±0.49
ENSMUSG00000027637 ENSMUST00000029165 29.562±5.95 178.883±38.07 30.381±6.03 21.852±10.74 53.733±26.18 54.147±18.97 14.257±0.90 31.219±10.36 43.092±8.68 44.126±17.79 17.786±1.37 90.440±38.40 32.686±12.15 7.714±2.82
ENSMUST00000126767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152551 N/A 123.761±15.39 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.611±0.72 N/A N/A
ENSMUST00000152942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.533±0.00 N/A N/A
ENSMUSG00000080880 ENSMUST00000117381 N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000081616 ENSMUST00000120950 N/A N/A N/A 8.236±0.00 N/A N/A N/A N/A N/A N/A N/A 0.792±0.00 N/A N/A
ENSMUSG00000083831 ENSMUST00000117790 N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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