C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: V-set and transmembrane domain containing 2A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109645 Vstm2a-002 ENSMUSG00000048834 10090 + 11:16257724-16284186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000109645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000109645 0.789±0.61 0.055±0.00 0.234±0.00 8.049±2.61 0.044±0.02 0.118±0.03 0.779±0.49 0.015±0.00 0.574±0.20 0.024±0.02 0.275±0.23 0.030±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LU CIL_0006LU_0002 CGP 11:16257724-16508484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302287 VSTM2A-001 protein_coding Homo_sapiens 0 845
ENST00000402613 VSTM2A-004 protein_coding Homo_sapiens 0 802
ENST00000404951 VSTM2A-002 protein_coding Homo_sapiens 0 841
ENST00000407838 VSTM2A-003 protein_coding Homo_sapiens 0 1677
ENST00000466888 VSTM2A-007 processed_transcript Homo_sapiens 0 924
ENST00000469952 VSTM2A-008 processed_transcript Homo_sapiens 0 436
ENST00000495904 VSTM2A-005 retained_intron Homo_sapiens 0 411
ENST00000498834 VSTM2A-006 processed_transcript Homo_sapiens 0 501

Loading