C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntrophin, acidic 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109728 Snta1-001 ENSMUSG00000027488 10090 - 2:154376313-154408099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109728 20.218±10.58 22.756±2.99 9.002±0.29 5.745±2.67 13.532±6.18 4.393±0.41 25.860±3.33 26.052±1.69 5.557±3.62 9.929±0.73 97.013±9.82 12.337±3.01 2.047±1.65 2.128±0.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000521 CIL_000521_0002 CGP 2:154335380-154408099
CIL_0006PI CIL_0006PI_0002 CGP 2:154376313-154539356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002027 IEA regulation of heart rate
GO:0003117 IMP regulation of vasoconstriction by circulating norepinephrine
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0007528 IMP neuromuscular junction development
GO:0017080 IEA sodium channel regulator activity
GO:0030165 IEA PDZ domain binding
GO:0031594 IEA neuromuscular junction
GO:0042383 IDA sarcolemma
GO:0043234 ISO protein complex
GO:0044325 IEA ion channel binding
GO:0045211 IDA postsynaptic membrane
GO:0050998 IEA nitric-oxide synthase binding
GO:0051117 IEA ATPase binding
GO:0060307 IEA regulation of ventricular cardiac muscle cell membrane repolarization
GO:0086005 IEA ventricular cardiac muscle cell action potential
GO:1902083 IEA negative regulation of peptidyl-cysteine S-nitrosylation
GO:1902305 IEA regulation of sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217381 SNTA1-001 protein_coding Homo_sapiens 0 2054

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