C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000521_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101391-ENSG00000101400 CGP 9606 20:33358839-33443892
GeneTranscriptPositionBiotype
ENSG00000101391 (CDK5RAP1)
CDK5 regulatory subunit associated protein 1 		ENST00000339269 (CDK5RAP1-012) 33358839-33401561 protein_coding
ENST00000346416 (CDK5RAP1-010) 33358839-33401561 protein_coding
ENST00000357886 (CDK5RAP1-011) 33358839-33401561 protein_coding
ENST00000427097 (CDK5RAP1-007) 33358839-33387533 protein_coding
ENST00000460043 (CDK5RAP1-003) 33366908-33401508 processed_transcript
ENST00000461356 (CDK5RAP1-015) 33379461-33401486 processed_transcript
ENST00000461710 (CDK5RAP1-014) 33358841-33373359 retained_intron
ENST00000471264 (CDK5RAP1-006) 33370499-33401452 processed_transcript
ENST00000473791 (CDK5RAP1-008) 33373601-33379588 retained_intron
ENST00000473997 (CDK5RAP1-013) 33358839-33401517 protein_coding
ENST00000477105 (CDK5RAP1-016) 33374115-33401505 processed_transcript
ENST00000481964 (CDK5RAP1-001) 33358839-33401479 processed_transcript
ENST00000482967 (CDK5RAP1-005) 33358839-33401504 processed_transcript
ENST00000488723 (CDK5RAP1-004) 33379513-33401523 processed_transcript
ENST00000496381 (CDK5RAP1-002) 33360351-33401478 processed_transcript
ENST00000498525 (CDK5RAP1-009) 33358845-33387504 processed_transcript
ENSG00000101400 (SNTA1)
syntrophin, alpha 1 		ENST00000217381 (SNTA1-001) 33407955-33443892 protein_coding
CIL_000521_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027487-ENSMUSG00000027488 CGP 10090 2:154335380-154408099
GeneTranscriptPositionBiotype
ENSMUSG00000027487 (Cdk5rap1)
CDK5 regulatory subunit associated protein 1 		ENSMUST00000028990 (Cdk5rap1-201) 154335386-154372719 protein_coding
ENSMUST00000109730 (Cdk5rap1-003) 154361250-154372731 protein_coding
ENSMUST00000109731 (Cdk5rap1-001) 154335380-154373010 protein_coding
ENSMUST00000137918 (Cdk5rap1-005) 154370674-154372691 processed_transcript
ENSMUST00000148289 (Cdk5rap1-002) 154342301-154372761 processed_transcript
ENSMUST00000150308 (Cdk5rap1-004) 154365833-154370781 processed_transcript
ENSMUST00000152180 (Cdk5rap1-006) 154350522-154354344 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000521_0001ENSG00000101391ENST00000339269ENST00000346416ENST00000357886ENST00000427097ENST00000460043ENST00000461356ENST00000461710ENST00000471264ENST00000473791ENST00000473997ENST00000477105ENST00000481964ENST00000482967ENST00000488723ENST00000496381ENST00000498525ENSG00000101400ENST00000217381CIL_000521_0002ENSMUSG00000027487ENSMUST00000028990ENSMUST00000109730ENSMUST00000109731ENSMUST00000137918ENSMUST00000148289ENSMUST00000150308ENSMUST00000152180
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000521_0001ENSG00000101391ENST00000339269ENST00000346416ENST00000357886ENST00000427097ENST00000460043ENST00000461356ENST00000461710ENST00000471264ENST00000473997ENST00000477105ENST00000482967ENST00000488723ENST00000496381ENST00000498525ENSG00000101400ENST00000217381CIL_000521_0002ENSMUSG00000027487ENSMUST00000028990ENSMUST00000109730ENSMUST00000109731ENSMUST00000148289ENSMUST00000150308ENSMUST00000152180
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101391 ENST00000339269 N/A N/A N/A N/A N/A N/A N/A 2.904±0.00 0.882±0.00 3.258±0.00 N/A N/A N/A N/A
ENST00000346416 4.173±0.00 N/A N/A 2.931±1.32 2.116±1.31 1.517±0.51 1.999±1.65 N/A 1.476±0.00 N/A 1.681±0.60 4.233±0.81 2.421±0.45 3.645±1.00
ENST00000357886 N/A N/A 0.785±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.719±0.00 N/A N/A N/A
ENST00000460043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.596±0.00 N/A N/A N/A
ENST00000461356 N/A N/A 2.012±0.00 N/A N/A N/A N/A N/A 1.802±0.00 N/A 5.463±0.00 N/A N/A N/A
ENST00000461710 N/A 1.632±0.00 0.410±0.00 0.720±0.18 N/A N/A N/A N/A N/A 0.619±0.00 0.597±0.00 1.434±0.00 N/A 1.797±0.00
ENST00000471264 N/A N/A N/A 3.462±0.00 2.302±0.00 2.427±0.00 2.618±0.00 N/A 2.713±0.00 N/A 4.066±0.00 N/A N/A N/A
ENST00000473791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473997 N/A N/A N/A N/A N/A N/A N/A N/A 1.980±0.00 N/A N/A 3.021±0.25 3.302±0.00 N/A
ENST00000477105 N/A N/A 1.057±0.00 2.087±0.00 1.896±0.00 N/A N/A N/A 1.730±0.00 1.561±0.00 N/A 2.809±0.00 N/A N/A
ENST00000481964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482967 N/A 9.077±0.00 N/A N/A 5.130±0.00 2.109±0.00 1.125±0.00 N/A 2.564±0.00 N/A 5.075±0.00 7.250±1.38 4.693±0.21 5.362±0.00
ENST00000488723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.790±0.00 6.676±0.00 7.419±0.00
ENST00000496381 4.554±0.00 6.583±0.00 2.045±0.00 3.268±1.07 N/A 1.915±0.00 2.594±1.91 4.346±0.15 2.017±0.00 2.048±0.00 3.557±0.00 7.738±4.12 4.586±0.00 6.273±0.06
ENST00000498525 N/A N/A 2.452±0.00 N/A N/A N/A N/A 3.397±0.00 N/A 2.670±0.00 N/A N/A N/A N/A
ENSG00000101400 ENST00000217381 28.385±0.00 18.864±0.00 1.557±0.00 32.246±21.37 18.125±17.51 10.950±9.31 48.669±41.13 7.635±6.81 4.976±0.06 3.224±2.82 84.691±54.68 13.277±11.34 5.158±0.92 20.768±10.37
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027487 ENSMUST00000028990 3.657±0.36 2.863±0.66 3.708±1.18 2.688±0.60 2.900±0.61 2.557±0.36 2.882±0.45 4.666±0.77 4.406±1.27 2.094±0.60 3.046±0.39 3.563±0.92 3.220±1.30 1.883±0.36
ENSMUST00000109730 N/A N/A N/A N/A 1.218±0.00 N/A N/A N/A N/A N/A N/A 2.141±0.00 N/A N/A
ENSMUST00000109731 0.558±0.00 N/A N/A 0.647±0.00 N/A N/A 1.072±0.00 N/A N/A N/A 0.706±0.22 0.602±0.00 N/A N/A
ENSMUST00000137918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148289 N/A 1.516±0.00 N/A N/A N/A 0.703±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150308 N/A N/A N/A 7.024±0.00 N/A N/A N/A N/A N/A N/A N/A 6.165±0.00 9.051±0.25 1.171±0.00
ENSMUST00000152180 1.597±0.35 2.116±0.62 N/A 1.894±0.26 1.725±0.17 2.018±0.17 1.635±0.04 N/A 2.194±0.37 2.214±0.04 N/A 3.164±0.73 N/A N/A

Loading