C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15440
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110042 Gm15440-001 ENSMUSG00000051107 10090 - 13:51685529-51701041 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110042
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110042 0.310±0.11 3.556±0.44 0.563±0.06 3.308±0.72 3.142±2.43 0.656±0.15 7.571±2.69 3.443±0.25 0.108±0.09 1.221±0.40 10.046±1.69 0.429±0.26 2.016±1.89 0.047±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UF CIL_0008UF_0002 VISTA 13:51620205-52221621

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339861 SEMA4D-006 protein_coding Homo_sapiens 0 387
ENST00000420101 SEMA4D-008 protein_coding Homo_sapiens 0 278
ENST00000420987 SEMA4D-202 protein_coding Homo_sapiens 0 387
ENST00000429836 SEMA4D-003 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000450295 SEMA4D-018 protein_coding Homo_sapiens 4e-24 119
ENST00000455551 SEMA4D-001 protein_coding Homo_sapiens 0 387
ENST00000469653 SEMA4D-009 processed_transcript Homo_sapiens 0 272
ENST00000475255 SEMA4D-007 processed_transcript Homo_sapiens 1.4013e-45 189
ENST00000492386 SEMA4D-010 retained_intron Homo_sapiens 0 387
ENST00000537934 SEMA4D-019 nonsense_mediated_decay Homo_sapiens 0 276

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