C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008UF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1339 VISTA 9606 9:89377569-89978974
GeneTranscriptPositionBiotype
ENSG00000130222 (GADD45G)
growth arrest and DNA-damage-inducible, gamma 		ENST00000252506 (GADD45G-001) 89605013-89606555 protein_coding
ENST00000375769 (GADD45G-002) 89605038-89606235 protein_coding
ENST00000494726 (GADD45G-003) 89605092-89606098 processed_transcript
ENSG00000225460 (RP13-93L13.1)
 ENST00000430017 (RP13-93L13.1-001) 89472237-89472692 processed_pseudogene
ENSG00000226206 (RP5-1050E16.2)
 ENST00000421297 (RP5-1050E16.2-001) 89799695-89821753 lincRNA
ENSG00000231799 (RP13-93L13.2)
 ENST00000438325 (RP13-93L13.2-001) 89449558-89450754 processed_pseudogene
ENSG00000236507 (RP5-1050E16.1)
 ENST00000442086 (RP5-1050E16.1-001) 89801727-89803061 lincRNA
ENSG00000237372 (UNQ6494)
uncharacterized LOC100129066 		ENST00000444374 (UNQ6494-001) 89701651-89719670 lincRNA
ENST00000617436 (UNQ6494-003) 89639814-89719759 lincRNA
ENSG00000237626 (RP11-406A20.1)
 ENST00000446201 (RP11-406A20.1-001) 89978282-89987486 lincRNA
CIL_0008UF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1339 VISTA 10090 13:51620205-52221621
GeneTranscriptPositionBiotype
ENSMUSG00000021451 (Sema4d)
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D 		ENSMUST00000021900 (Sema4d-002) 51701246-51793747 protein_coding
ENSMUST00000110039 (Sema4d-003) 51701250-51734763 protein_coding
ENSMUST00000110040 (Sema4d-001) 51701246-51793673 protein_coding
ENSMUST00000125511 (Sema4d-004) 51711500-51714159 retained_intron
ENSMUST00000138228 (Sema4d-006) 51723656-51748815 processed_transcript
ENSMUST00000139018 (Sema4d-010) 51725271-51754765 processed_transcript
ENSMUST00000139858 (Sema4d-012) 51725390-51777111 processed_transcript
ENSMUST00000139865 (Sema4d-005) 51723656-51748919 processed_transcript
ENSMUST00000143396 (Sema4d-007) 51725341-51748726 processed_transcript
ENSMUST00000146238 (Sema4d-008) 51725291-51756802 processed_transcript
ENSMUST00000146922 (Sema4d-009) 51725314-51756668 processed_transcript
ENSMUST00000150662 (Sema4d-011) 51725224-51752165 processed_transcript
ENSMUST00000155896 (Sema4d-013) 51725423-51793664 processed_transcript
ENSMUSG00000021453 (Gadd45g)
growth arrest and DNA-damage-inducible 45 gamma 		ENSMUST00000021903 (Gadd45g-001) 51846678-51848468 protein_coding
ENSMUST00000132480 (Gadd45g-002) 51846744-51848224 retained_intron
ENSMUSG00000035139 (Secisbp2)
SECIS binding protein 2 		ENSMUST00000040117 (Secisbp2-001) 51651697-51684044 protein_coding
ENSMUST00000110044 (Secisbp2-002) 51651741-51666256 protein_coding
ENSMUST00000127360 (Secisbp2-004) 51651797-51657029 processed_transcript
ENSMUST00000146011 (Secisbp2-006) 51679733-51682529 retained_intron
ENSMUST00000153877 (Secisbp2-005) 51681773-51683489 retained_intron
ENSMUST00000154202 (Secisbp2-003) 51651797-51665345 processed_transcript
ENSMUSG00000051107 (Gm15440)
predicted gene 15440 		ENSMUST00000110042 (Gm15440-001) 51685529-51701041 protein_coding
ENSMUSG00000062248 (Cks2)
CDC28 protein kinase regulatory subunit 2 		ENSMUST00000075853 (Cks2-001) 51645232-51650660 protein_coding
ENSMUSG00000064672 (Gm22806)
predicted gene, 22806 		ENSMUST00000082738 (Gm22806-201) 51648199-51648334 snoRNA
ENSMUSG00000097495 (Gm26651)
predicted gene, 26651 		ENSMUST00000181851 (Gm26651-201) 51973214-51976583 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UF_0001ENSG00000130222ENST00000252506ENST00000375769ENST00000494726ENSG00000225460ENST00000430017ENSG00000226206ENST00000421297ENSG00000231799ENST00000438325ENSG00000236507ENST00000442086ENSG00000237372ENST00000444374ENST00000617436ENSG00000237626ENST00000446201CIL_0008UF_0002ENSMUSG00000021451ENSMUST00000021900ENSMUST00000110039ENSMUST00000110040ENSMUST00000125511ENSMUST00000138228ENSMUST00000139018ENSMUST00000139858ENSMUST00000139865ENSMUST00000143396ENSMUST00000146238ENSMUST00000146922ENSMUST00000150662ENSMUST00000155896ENSMUSG00000021453ENSMUST00000021903ENSMUST00000132480ENSMUSG00000035139ENSMUST00000040117ENSMUST00000110044ENSMUST00000127360ENSMUST00000146011ENSMUST00000153877ENSMUST00000154202ENSMUSG00000051107ENSMUST00000110042ENSMUSG00000062248ENSMUST00000075853ENSMUSG00000064672ENSMUST00000082738ENSMUSG00000097495ENSMUST00000181851
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UF_0001ENSG00000130222ENST00000252506ENST00000375769ENST00000494726ENSG00000225460ENST00000430017ENSG00000226206ENST00000421297ENSG00000231799ENST00000438325ENSG00000236507ENST00000442086ENSG00000237372ENST00000444374ENST00000617436ENSG00000237626ENST00000446201CIL_0008UF_0002ENSMUSG00000021451ENSMUST00000021900ENSMUST00000110039ENSMUST00000110040ENSMUSG00000021453ENSMUST00000021903ENSMUST00000132480ENSMUSG00000035139ENSMUST00000040117ENSMUST00000110044ENSMUSG00000051107ENSMUST00000110042ENSMUSG00000062248ENSMUST00000075853ENSMUSG00000064672ENSMUST00000082738ENSMUSG00000097495ENSMUST00000181851
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130222 ENST00000252506 2.905±0.00 2.093±0.00 N/A 4.756±0.00 2.842±0.00 5.076±4.94 6.013±4.90 6.674±2.48 34.666±0.00 6.577±0.00 8.612±7.13 14.197±9.31 53.134±18.57 15.766±1.55
ENST00000375769 N/A N/A 0.101±0.00 1.787±0.00 N/A 2.145±0.00 3.391±0.00 5.480±0.00 0.859±0.00 2.055±0.55 N/A 8.211±0.00 N/A N/A
ENST00000494726 N/A N/A N/A N/A 1.139±0.12 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225460 ENST00000430017 N/A N/A N/A N/A N/A N/A 0.053±0.00 0.086±0.00 0.622±0.00 0.544±0.00 N/A 0.033±0.00 N/A 0.265±0.00
ENSG00000226206 ENST00000421297 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A 0.138±0.03 0.153±0.06 0.298±0.00
ENSG00000231799 ENST00000438325 N/A 0.264±0.00 0.322±0.00 0.360±0.00 0.129±0.08 0.035±0.01 0.030±0.00 0.240±0.00 0.416±0.00 0.057±0.00 0.048±0.00 0.065±0.01 N/A 0.045±0.01
ENSG00000236507 ENST00000442086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A
ENSG00000237372 ENST00000444374 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A N/A N/A 0.056±0.00
ENST00000617436 N/A 0.062±0.00 N/A 0.076±0.00 0.016±0.00 N/A 0.014±0.00 N/A 0.785±0.00 N/A 0.061±0.00 0.041±0.03 0.070±0.02 0.026±0.01
ENSG00000237626 ENST00000446201 N/A N/A N/A 0.037±0.00 N/A 0.066±0.00 N/A N/A N/A N/A N/A N/A N/A 0.953±0.28
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021451 ENSMUST00000021900 2.512±2.30 3.353±0.72 1.904±0.04 5.629±1.74 11.877±4.74 6.683±0.67 1.705±0.42 20.408±3.88 1.810±1.59 6.183±0.47 N/A 4.087±1.93 7.222±3.90 0.419±0.10
ENSMUST00000110039 1.182±0.82 N/A 0.496±0.19 N/A N/A N/A N/A N/A 0.324±0.22 1.874±0.35 N/A 0.982±0.25 N/A N/A
ENSMUST00000110040 0.699±0.53 0.466±0.05 0.356±0.07 0.864±0.21 3.916±1.11 1.282±0.25 N/A 5.242±1.22 0.465±0.25 N/A 2.867±0.00 1.149±0.28 2.421±0.83 0.137±0.03
ENSMUST00000125511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000021453 ENSMUST00000021903 34.765±9.13 6.910±4.70 49.205±21.26 31.745±18.57 31.355±14.01 11.123±1.55 10.387±3.28 27.770±2.08 8.822±6.19 22.876±3.90 49.715±24.08 20.931±4.07 57.508±22.16 5.677±1.19
ENSMUST00000132480 5.874±0.00 6.540±1.67 N/A 6.588±2.88 14.153±2.93 3.255±1.01 1.140±0.17 5.693±1.49 1.313±0.60 5.159±0.90 N/A 7.502±1.99 8.423±0.00 1.004±0.36
ENSMUSG00000035139 ENSMUST00000040117 6.029±0.54 8.342±1.86 5.705±1.38 7.996±3.15 5.328±2.07 6.169±2.33 4.119±0.74 8.420±1.20 7.143±2.04 5.551±1.17 3.363±0.79 7.915±3.18 5.303±1.94 8.407±1.03
ENSMUST00000110044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.204±0.00 N/A N/A
ENSMUST00000127360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051107 ENSMUST00000110042 0.310±0.11 3.556±0.44 0.563±0.06 3.308±0.72 3.142±2.43 0.656±0.15 7.571±2.69 3.443±0.25 0.108±0.09 1.221±0.40 10.046±1.69 0.429±0.26 2.016±1.89 0.047±0.00
ENSMUSG00000062248 ENSMUST00000075853 6.072±3.37 7.901±1.03 7.134±0.76 23.999±17.29 3.715±0.80 17.707±1.07 0.632±0.20 21.138±1.60 114.427±108.83 3.761±0.61 0.316±0.30 19.792±5.36 51.848±39.17 47.515±18.86
ENSMUSG00000064672 ENSMUST00000082738 N/A N/A N/A N/A N/A N/A N/A N/A 10.945±5.78 N/A N/A 15.157±9.18 12.053±5.23 N/A
ENSMUSG00000097495 ENSMUST00000181851 0.012±0.00 0.026±0.00 0.007±0.00 N/A 0.029±0.00 0.104±0.07 0.012±0.00 0.016±0.01 0.004±0.00 0.034±0.02 N/A 0.044±0.02 0.206±0.14 0.219±0.09

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