C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | calpain 3 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000110719  |
Capn3-006 |
ENSMUSG00000079110 |
10090 | + |
2:120476976-120504913  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0005PL | CIL_0005PL_0002 | CGP | 2:120355312-120461700 |
| CIL_0004QL | CIL_0004QL_0003 | CGP | 2:120403896-120504913 |
| CIL_0004QM | CIL_0004QM_0003 | CGP | 2:120456019-120563843 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0004198 | IDA | calcium-dependent cysteine-type endopeptidase activity |
| GO:0005509 | IEA | calcium ion binding |
| GO:0005515 | IPI | protein binding |
| GO:0005622 | IEA | intracellular |
| GO:0006508 | IDA | proteolysis |
| GO:0030239 | IMP | myofibril assembly |
| GO:0045214 | IMP | sarcomere organization |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000318023
|
CAPN3-201 | protein_coding | Homo_sapiens | 0 | 1120 |
|
ENST00000337571
|
CAPN3-006 | protein_coding | Homo_sapiens | 0 | 544 |
|
ENST00000349748
|
CAPN3-005 | protein_coding | Homo_sapiens | 0 | 1271 |
|
ENST00000356316
|
CAPN3-202 | protein_coding | Homo_sapiens | 0 | 544 |
|
ENST00000357568
|
CAPN3-008 | protein_coding | Homo_sapiens | 0 | 2021 |
|
ENST00000397163
|
CAPN3-009 | protein_coding | Homo_sapiens | 0 | 2017 |
|
ENST00000397200
|
CAPN3-007 | protein_coding | Homo_sapiens | 0 | 544 |
|
ENST00000397204
|
CAPN3-012 | protein_coding | Homo_sapiens | 0 | 544 |
|
ENST00000466222
|
CAPN3-014 | retained_intron | Homo_sapiens | 0 | 544 |
|
ENST00000561817
|
CAPN3-013 | protein_coding | Homo_sapiens | 0 | 483 |
|
ENST00000562199
|
CAPN3-020 | processed_transcript | Homo_sapiens | 0 | 392 |
|
ENST00000564503
|
CAPN3-019 | protein_coding | Homo_sapiens | 0 | 316 |
|
ENST00000565274
|
CAPN3-018 | nonsense_mediated_decay | Homo_sapiens | 0 | 316 |
|
ENST00000567071
|
CAPN3-011 | protein_coding | Homo_sapiens | 0 | 374 |
|
ENST00000567817
|
CAPN3-021 | nonsense_mediated_decay | Homo_sapiens | 0 | 379 |
|
ENST00000568153
|
CAPN3-022 | nonsense_mediated_decay | Homo_sapiens | 0 | 279 |
|
ENST00000569136
|
CAPN3-015 | protein_coding | Homo_sapiens | 0 | 544 |
|
ENST00000569827
|
CAPN3-010 | protein_coding | Homo_sapiens | 0 | 536 |
