C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 3, (p94)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349748 CAPN3-005 ENSG00000092529 9606 + 15:42359585-42412317 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QL CIL_0004QL_0002 CGP 15:42273233-42412318
CIL_0004QM CIL_0004QM_0002 CGP 15:42359500-42491123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IDA catalytic activity
GO:0004198 IEA:ISS calcium-dependent cysteine-type endopeptidase activity
GO:0004871 TAS signal transducer activity
GO:0005509 IEA:ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005622 TAS:IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0005886 ISS plasma membrane
GO:0006461 ISS protein complex assembly
GO:0006508 IEA:IDA proteolysis
GO:0006915 TAS apoptotic process
GO:0007165 TAS signal transduction
GO:0007517 TAS muscle organ development
GO:0008233 IDA peptidase activity
GO:0008234 TAS cysteine-type peptidase activity
GO:0008307 ISS structural constituent of muscle
GO:0014718 ISS positive regulation of satellite cell activation involved in skeletal muscle regeneration
GO:0014850 ISS response to muscle activity
GO:0030016 ISS myofibril
GO:0030018 ISS Z disc
GO:0030239 ISS myofibril assembly
GO:0030315 ISS T-tubule
GO:0031402 ISS sodium ion binding
GO:0031432 IPI titin binding
GO:0032947 ISS protein complex scaffold
GO:0033234 IDA negative regulation of protein sumoylation
GO:0043066 IMP negative regulation of apoptotic process
GO:0043122 IMP regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043234 ISS protein complex
GO:0045214 IEA:ISS sarcomere organization
GO:0045862 ISS positive regulation of proteolysis
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046716 TAS muscle cell cellular homeostasis
GO:0050790 IDA regulation of catalytic activity
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051281 ISS positive regulation of release of sequestered calcium ion into cytosol
GO:0051592 ISS response to calcium ion
GO:0055103 IDA ligase regulator activity
GO:0061061 ISS muscle structure development
GO:0071277 ISS cellular response to calcium ion
GO:0071472 ISS cellular response to salt stress
GO:0072657 ISS protein localization to membrane
GO:0097264 IDA self proteolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110721 Capn3-002 protein_coding Mus_musculus 0 2998
ENSMUST00000028748 Capn3-004 protein_coding Mus_musculus 0 2507
ENSMUST00000145993 Capn3-007 processed_transcript Mus_musculus 0 2503
ENSMUST00000090028 Capn3-005 protein_coding Mus_musculus 0 1964
ENSMUST00000110716 Capn3-003 protein_coding Mus_musculus 0 1814
ENSMUST00000124129 Capn3-009 processed_transcript Mus_musculus 0 1426
ENSMUST00000110719 Capn3-006 protein_coding Mus_musculus 0 1271
ENSMUST00000028749 Capn3-001 protein_coding Mus_musculus 0 1188
ENSMUST00000139336 Capn3-008 processed_transcript Mus_musculus 0 1079
ENSMUST00000151342 Capn3-010 processed_transcript Mus_musculus 0 472
ENSMUST00000125238 Capn3-012 processed_transcript Mus_musculus 0 422
ENSMUST00000141181 Capn3-013 processed_transcript Mus_musculus 0 313
ENSMUST00000151924 Capn3-011 processed_transcript Mus_musculus 8.00141e-43 180
ENSMUST00000168514 Capn8-202 protein_coding Mus_musculus 1e-31 143
ENSMUST00000048941 Capn8-201 protein_coding Mus_musculus 1e-31 143
ENSDART00000077071 CAPN1 (1 of 2)-203 protein_coding Danio_rerio 0.00000009 64
ENSDART00000002949 CAPN1 (1 of 2)-202 protein_coding Danio_rerio 0.00000009 64
ENSDART00000113658 CAPN1 (1 of 2)-201 protein_coding Danio_rerio 0.00000009 64

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