C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM-domain containing, protein kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111233 Limk1-002 ENSMUSG00000029674 10090 - 5:134656040-134678248 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000111233
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000111233 2.894±0.93 7.145±2.95 1.456±0.23 6.236±2.94 2.328±0.95 1.535±0.75 1.427±0.62 0.793±0.46 6.190±1.04 0.448±0.18 4.015±1.45 20.716±18.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006468 IEA protein phosphorylation
GO:0008270 IEA zinc ion binding
GO:0045773 IGI positive regulation of axon extension
GO:0046982 IPI protein heterodimerization activity
GO:0051496 IGI positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336180 LIMK1-001 protein_coding Homo_sapiens 0 2069
ENST00000418310 LIMK1-002 protein_coding Homo_sapiens 0 2069
ENST00000435201 LIMK1-003 nonsense_mediated_decay Homo_sapiens 0 1164
ENST00000483414 LIMK1-004 retained_intron Homo_sapiens 0 1140
ENST00000486361 LIMK1-006 processed_transcript Homo_sapiens 0 311
ENST00000491052 LIMK1-007 processed_transcript Homo_sapiens 0 562
ENST00000538333 LIMK1-005 protein_coding Homo_sapiens 0 2084

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