C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112173 Tspan9-001 ENSMUSG00000030352 10090 - 6:127961396-128143563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112173 9.347±2.47 18.628±0.00 32.814±0.00 7.725±2.46 6.862±1.88 3.380±0.33 9.069±1.23 14.997±11.68 2.079±0.00 47.869±8.82 2.340±0.99 16.623±9.26 28.630±0.00 0.310±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0008150 ND biological_process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0097197 IEA tetraspanin-enriched microdomain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000040500 tspan9a-201 protein_coding Danio_rerio 0 479
ENSDART00000146692 tspan9a-001 protein_coding Danio_rerio 0 479
ENST00000011898 TSPAN9-001 protein_coding Homo_sapiens 0 1182
ENST00000407263 TSPAN9-003 protein_coding Homo_sapiens 0 887
ENST00000444315 TSPAN9-005 nonsense_mediated_decay Homo_sapiens 3e-31 139
ENST00000537971 TSPAN9-201 protein_coding Homo_sapiens 0 1190

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