C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycoprotein m6b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112235 Gpm6b-001 ENSMUSG00000031342 10090 + X:166238911-166388988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112235
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112235 8.070±5.97 2.819±0.44 12.095±0.00 7.062±1.43 1.323±0.66 2.811±0.87 2.138±0.36 0.408±0.20 15.646±1.05 0.351±0.21 7.102±2.65 1.190±0.83 3.510±1.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0005886 IDA plasma membrane
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0030501 ISS positive regulation of bone mineralization
GO:0032956 ISS regulation of actin cytoskeleton organization
GO:0045121 IDA membrane raft
GO:0051612 IDA negative regulation of serotonin uptake
GO:0051893 ISS regulation of focal adhesion assembly
GO:0085029 ISS extracellular matrix assembly
GO:2000009 IDA negative regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316715 GPM6B-003 protein_coding Homo_sapiens 0 1404
ENST00000355135 GPM6B-008 protein_coding Homo_sapiens 0 1279
ENST00000356942 GPM6B-002 protein_coding Homo_sapiens 0 1279
ENST00000398361 GPM6B-005 protein_coding Homo_sapiens 0 1192
ENST00000432046 GPM6BP2-001 unprocessed_pseudogene Homo_sapiens 6.00036e-42 172
ENST00000442797 GPM6BP3-001 processed_pseudogene Homo_sapiens 6.00036e-42 172
ENST00000446387 GPM6BP1-001 unprocessed_pseudogene Homo_sapiens 6.00036e-42 172
ENST00000454189 GPM6B-001 protein_coding Homo_sapiens 0 2194
ENST00000468080 GPM6B-011 protein_coding Homo_sapiens 0 595
ENST00000472735 GPM6B-010 protein_coding Homo_sapiens 0 429
ENST00000475307 GPM6B-004 protein_coding Homo_sapiens 0 355
ENST00000493085 GPM6B-012 protein_coding Homo_sapiens 0 658
ENST00000493677 GPM6B-007 protein_coding Homo_sapiens 0 915
ENST00000495211 GPM6B-009 protein_coding Homo_sapiens 0 652

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