C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycoprotein M6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000454189 GPM6B-001 ENSG00000046653 9606 - X:13771456-13938638 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000454189
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000454189 2.136±0.00 1.015±0.00 0.419±0.00 69.700±32.55 1.102±0.28 10.757±0.00 0.512±0.06 1.817±1.54 0.781±0.69 3.275±2.01 0.094±0.05 0.400±0.18 0.200±0.08 0.971±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OC CIL_0000OC_0002 CGP X:13734745-13938638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0003674 ND molecular_function
GO:0005886 ISS plasma membrane
GO:0007399 NAS nervous system development
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0030501 IMP positive regulation of bone mineralization
GO:0032956 IMP regulation of actin cytoskeleton organization
GO:0045121 ISS membrane raft
GO:0051612 ISS negative regulation of serotonin uptake
GO:0051893 IMP regulation of focal adhesion assembly
GO:0085029 IMP extracellular matrix assembly
GO:2000009 ISS negative regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112235 Gpm6b-001 protein_coding Mus_musculus 0 2194
ENSMUST00000112224 Gpm6b-005 protein_coding Mus_musculus 0 2056
ENSMUST00000112223 Gpm6b-004 protein_coding Mus_musculus 0 2056
ENSMUST00000112233 Gpm6b-003 protein_coding Mus_musculus 0 1205
ENSMUST00000112226 Gpm6b-009 protein_coding Mus_musculus 0 1066
ENSMUST00000112227 Gpm6b-008 protein_coding Mus_musculus 0 1066
ENSMUST00000060210 Gpm6b-002 protein_coding Mus_musculus 0 1053
ENSMUST00000112228 Gpm6b-007 protein_coding Mus_musculus 0 915
ENSMUST00000112229 Gpm6b-006 protein_coding Mus_musculus 0 915
ENSMUST00000143263 Gpm6b-011 nonsense_mediated_decay Mus_musculus 0 915
ENSMUST00000123408 Gpm6b-010 nonsense_mediated_decay Mus_musculus 0 915
ENSMUST00000129731 Gpm6b-012 retained_intron Mus_musculus 0 267

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