C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycoprotein m6b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031342 Gpm6b 10090 + X:166238911-166388988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060210 Gpm6b-002 166238972-166388988 protein_coding
  ENSMUST00000112223 Gpm6b-004 166344692-166388988 protein_coding
  ENSMUST00000112224 Gpm6b-005 166344692-166388988 protein_coding
  ENSMUST00000112226 Gpm6b-009 166344692-166388988 protein_coding
  ENSMUST00000112227 Gpm6b-008 166344692-166388988 protein_coding
  ENSMUST00000112228 Gpm6b-007 166344692-166388988 protein_coding
  ENSMUST00000112229 Gpm6b-006 166344692-166388988 protein_coding
  ENSMUST00000112233 Gpm6b-003 166238972-166388988 protein_coding
  ENSMUST00000112235 Gpm6b-001 166238911-166388988 protein_coding
  ENSMUST00000123408 Gpm6b-010 166344692-166384000 nonsense_mediated_decay
  ENSMUST00000129731 Gpm6b-012 166344842-166373287 retained_intron
  ENSMUST00000143263 Gpm6b-011 166344692-166384000 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060210ENSMUST00000112223ENSMUST00000112224ENSMUST00000112226ENSMUST00000112228ENSMUST00000112229ENSMUST00000112233ENSMUST00000112235ENSMUST00000143263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060210 N/A 0.450±0.08 1.918±0.00 40.453±1.67 2.522±0.00 0.810±0.10 N/A 1.063±0.21 0.339±0.16 N/A 0.347±0.10 3.939±1.25 0.345±0.29 2.440±0.40
ENSMUST00000112223 1.017±0.26 0.591±0.18 0.874±0.03 10.827±0.00 1.692±0.33 0.595±0.12 0.511±0.00 N/A 0.149±0.01 N/A 0.244±0.09 1.581±0.83 N/A N/A
ENSMUST00000112224 1.008±0.37 0.660±0.29 2.481±0.08 24.707±0.00 2.032±0.00 0.753±0.00 1.078±0.34 0.566±0.07 0.226±0.11 N/A 0.316±0.16 1.603±0.36 0.479±0.45 N/A
ENSMUST00000112226 N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.00 N/A 0.312±0.00 N/A N/A N/A
ENSMUST00000112228 N/A N/A N/A 23.099±3.89 N/A N/A N/A N/A 0.202±0.08 N/A N/A N/A N/A N/A
ENSMUST00000112229 N/A N/A N/A 16.868±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112233 1.323±0.16 1.019±0.46 1.897±0.10 N/A 6.221±1.55 0.823±0.20 1.018±0.10 1.144±0.35 0.192±0.00 8.393±2.18 0.409±0.06 6.211±2.70 0.650±0.22 1.914±0.44
ENSMUST00000112235 8.070±5.97 N/A 2.819±0.44 12.095±0.00 7.062±1.43 1.323±0.66 2.811±0.87 2.138±0.36 0.408±0.20 15.646±1.05 0.351±0.21 7.102±2.65 1.190±0.83 3.510±1.41
ENSMUST00000143263 N/A N/A N/A N/A N/A 1.260±0.11 2.115±0.00 1.751±0.07 0.237±0.00 N/A N/A 9.029±0.85 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0005886 IDA plasma membrane
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0030501 ISS positive regulation of bone mineralization
GO:0032956 ISS regulation of actin cytoskeleton organization
GO:0045121 IDA membrane raft
GO:0051612 IDA negative regulation of serotonin uptake
GO:0051893 ISS regulation of focal adhesion assembly
GO:0085029 ISS extracellular matrix assembly
GO:2000009 IDA negative regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001676 gpm6bb glycoprotein M6Bb protein_coding Danio_rerio
ENSG00000046653 GPM6B glycoprotein M6B protein_coding Homo_sapiens

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