C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenoprotein K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112268 Selk-001 ENSMUSG00000042682 10090 + 14:29968308-29975074 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112268 17.661±1.37 6.241±1.15 29.820±5.83 32.657±12.87 13.039±2.78 11.188±0.97 17.982±0.45 20.829±3.69 34.718±29.43 22.712±0.80 21.183±5.15 19.505±7.47 23.554±6.62 27.397±9.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00002V CIL_00002V_0002 CGP 14:29968308-29993221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IEA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0010742 IMP macrophage derived foam cell differentiation
GO:0016021 IEA integral component of membrane
GO:0018345 IMP protein palmitoylation
GO:0030335 IMP positive regulation of cell migration
GO:0042102 IMP positive regulation of T cell proliferation
GO:0045728 IMP respiratory burst after phagocytosis
GO:0051223 IMP regulation of protein transport
GO:2000406 IMP positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000407837 RP3-323K23.3-001 processed_pseudogene Homo_sapiens 0 265
ENST00000435923 AC093716.1-001 processed_pseudogene Homo_sapiens 0 207
ENST00000488746 SELK-004 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000495461 SELK-001 protein_coding Homo_sapiens 0 628
ENST00000541726 SELK-201 protein_coding Homo_sapiens 0 608
ENST00000589357 CTD-2528L19.3-001 processed_pseudogene Homo_sapiens 0 296

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