C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112585 Apobec1-002 ENSMUSG00000040613 10090 - 6:122577801-122602371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112585 5.348±1.11 1.871±0.84 4.069±0.04 0.301±0.05 4.700±0.66 7.816±0.98 1.075±0.57 1.440±0.45 2.088±1.09 2.645±0.51 0.719±0.24 5.671±2.82 0.448±0.27 0.179±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HL CIL_0008HL_0002 VISTA 6:122092605-122696323
CIL_00001I CIL_00001I_0002 CGP 6:122577792-122610087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISS cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0010332 IMP response to gamma radiation
GO:0016554 IMP cytidine to uridine editing
GO:0016556 IMP mRNA modification
GO:0016814 IEA hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
GO:0017091 IDA AU-rich element binding
GO:0042127 IGI regulation of cell proliferation
GO:0042157 IMP lipoprotein metabolic process
GO:0042158 IGI lipoprotein biosynthetic process
GO:0042953 IGI lipoprotein transport
GO:0048255 IDA mRNA stabilization
GO:0080111 IDA DNA demethylation
GO:0090310 IMP negative regulation of methylation-dependent chromatin silencing

Homologs

No Homologs available.

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