C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396204 RORB-201 ENSG00000198963 9606 + 9:74615600-74687201 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungTestisENST00000396204
Transcript ID Breast Colon Heart Lung Testis
ENST00000396204 0.092±0.07 0.065±0.00 0.318±0.00 0.242±0.00 0.118±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007601 IEA visual perception
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0030522 IEA intracellular receptor signaling pathway
GO:0035881 ISS amacrine cell differentiation
GO:0042462 ISS eye photoreceptor cell development
GO:0042752 ISS regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046548 ISS retinal rod cell development
GO:0046549 ISS retinal cone cell development
GO:0048511 IEA rhythmic process
GO:0060041 ISS retina development in camera-type eye
GO:0071300 ISS cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040153 Rorb-001 protein_coding Mus_musculus 0 2843
ENSMUST00000112832 Rorb-005 protein_coding Mus_musculus 0 2782
ENSMUST00000112828 Rorb-002 protein_coding Mus_musculus 0 2782
ENSMUST00000147907 Rorb-004 retained_intron Mus_musculus 0 994
ENSMUST00000149635 Rorb-003 retained_intron Mus_musculus 0 933

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