C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase long-chain family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112903 Acsl4-003 ENSMUSG00000031278 10090 - X:142317993-142390504 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112903
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112903 0.843±0.32 11.035±1.83 0.966±0.02 8.398±0.00 1.090±0.41 0.462±0.06 1.209±0.13 2.081±1.00 1.844±1.08 5.998±1.36 1.003±0.31 6.762±4.53 5.355±3.43 1.075±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068B CIL_00068B_0002 CGP X:142304752-142390535
CIL_00079Z CIL_00079Z_0002 CGP X:142317993-142843494

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001676 IEA long-chain fatty acid metabolic process
GO:0004467 ISA long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0019217 TAS regulation of fatty acid metabolic process
GO:0030182 IMP neuron differentiation
GO:0060136 IMP embryonic process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000006489 acsl4a-001 protein_coding Danio_rerio 0 571
ENST00000340800 ACSL4-201 protein_coding Homo_sapiens 0 3249
ENST00000348502 ACSL4-001 protein_coding Homo_sapiens 0 3262
ENST00000469796 ACSL4-003 protein_coding Homo_sapiens 0 3249
ENST00000469857 ACSL4-002 protein_coding Homo_sapiens 2e-16 90
ENST00000502391 ACSL4-007 protein_coding Homo_sapiens 0 516
ENST00000504980 ACSL4-009 protein_coding Homo_sapiens 0 442
ENST00000505075 ACSL4-011 processed_transcript Homo_sapiens 0 252
ENST00000505855 ACSL4-008 protein_coding Homo_sapiens 0 739
ENST00000508092 ACSL4-006 protein_coding Homo_sapiens 0 449
ENST00000514500 ACSL4-010 nonsense_mediated_decay Homo_sapiens 0 580

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