C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112959 Prdm8-201 ENSMUSG00000035456 10090 + 5:98180869-98187448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000112959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000112959 0.251±0.04 0.053±0.02 0.025±0.00 10.211±3.58 0.937±0.20 0.095±0.04 0.043±0.01 0.028±0.02 0.036±0.04 1.676±0.29 0.235±0.11 0.033±0.02 0.064±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069U CIL_00069U_0002 CGP 5:97882783-98187448
CIL_00069V CIL_00069V_0002 CGP 5:98180869-98277030

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003714 IMP transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0016571 IDA histone methylation
GO:0021540 IMP corpus callosum morphogenesis
GO:0021952 IMP central nervous system projection neuron axonogenesis
GO:0021957 IMP corticospinal tract morphogenesis
GO:0022008 IDA neurogenesis
GO:0035097 IC histone methyltransferase complex
GO:0042054 IDA histone methyltransferase activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046974 IDA histone methyltransferase activity (H3-K9 specific)
GO:0051567 IDA histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339711 PRDM8-201 protein_coding Homo_sapiens 0 2843
ENST00000415738 PRDM8-001 protein_coding Homo_sapiens 0 2861
ENST00000504452 PRDM8-003 protein_coding Homo_sapiens 0 2843
ENST00000515013 PRDM8-004 protein_coding Homo_sapiens 0 1369

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