C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 128
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113026 Rnf128-001 ENSMUSG00000031438 10090 + X:139610620-139673145 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113026 3.180±3.07 49.939±23.74 11.204±1.07 0.747±0.29 1.744±0.40 30.835±2.02 10.332±1.36 24.946±5.47 25.714±8.74 1.225±0.32 4.967±0.45 20.621±9.05 70.473±15.25 1.011±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006A1 CIL_0006A1_0002 CGP X:139480367-139673145
CIL_0006AC CIL_0006AC_0002 CGP X:139563316-139753405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005770 IDA late endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042036 IDA negative regulation of cytokine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255499 RNF128-001 protein_coding Homo_sapiens 0 2634
ENST00000324342 RNF128-002 protein_coding Homo_sapiens 0 1951
ENST00000418562 RNF128-003 protein_coding Homo_sapiens 0 595

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