C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein and VPS9 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113101 Gapvd1-004 ENSMUSG00000026867 10090 - 2:34677483-34704386 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000113101
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000113101 8.757±0.00 12.958±0.00 15.379±1.92 6.669±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265956 GAPVD1-201 protein_coding Homo_sapiens 0 350
ENST00000297933 GAPVD1-015 protein_coding Homo_sapiens 0 1927
ENST00000312123 GAPVD1-003 protein_coding Homo_sapiens 0 1731
ENST00000394083 GAPVD1-016 protein_coding Homo_sapiens 0 2259
ENST00000394104 GAPVD1-202 protein_coding Homo_sapiens 0 1766
ENST00000394105 GAPVD1-012 protein_coding Homo_sapiens 0 1927
ENST00000431329 GAPVD1-009 protein_coding Homo_sapiens 0 350
ENST00000436712 GAPVD1-011 protein_coding Homo_sapiens 0 350
ENST00000467750 GAPVD1-001 protein_coding Homo_sapiens 0 350
ENST00000470056 GAPVD1-002 protein_coding Homo_sapiens 0 2272
ENST00000474637 GAPVD1-006 retained_intron Homo_sapiens 0 1877
ENST00000495955 GAPVD1-014 protein_coding Homo_sapiens 0 1766
ENST00000497580 GAPVD1-013 nonsense_mediated_decay Homo_sapiens 0 350

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