C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GTPase activating protein and VPS9 domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113111 Gapvd1-002 ENSMUSG00000026867 10090 - 2:34676184-34717297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113111
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113111 6.376±0.77 4.584±1.66 5.317±0.30 11.328±1.62 5.701±1.16 5.217±1.51 3.604±0.33 5.306±0.93 6.681±2.54 8.772±0.64 3.358±0.81 4.897±2.69 6.729±1.28 3.739±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265956 GAPVD1-201 protein_coding Homo_sapiens 0 1676
ENST00000297933 GAPVD1-015 protein_coding Homo_sapiens 0 3723
ENST00000312123 GAPVD1-003 protein_coding Homo_sapiens 0 3452
ENST00000394083 GAPVD1-016 protein_coding Homo_sapiens 0 1914
ENST00000394104 GAPVD1-202 protein_coding Homo_sapiens 0 1962
ENST00000394105 GAPVD1-012 protein_coding Homo_sapiens 0 2717
ENST00000431329 GAPVD1-009 protein_coding Homo_sapiens 0 1013
ENST00000436712 GAPVD1-011 protein_coding Homo_sapiens 0 1611
ENST00000467750 GAPVD1-001 protein_coding Homo_sapiens 0 1657
ENST00000470056 GAPVD1-002 protein_coding Homo_sapiens 0 1927
ENST00000474637 GAPVD1-006 retained_intron Homo_sapiens 0 1879
ENST00000479511 GAPVD1-010 retained_intron Homo_sapiens 0 344
ENST00000495955 GAPVD1-014 protein_coding Homo_sapiens 0 1962
ENST00000497580 GAPVD1-013 nonsense_mediated_decay Homo_sapiens 0 806

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