C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113335 Ubr2-201 ENSMUSG00000023977 10090 - 17:46928292-47010532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113335 3.708±2.08 11.956±4.73 6.149±1.37 4.948±1.84 7.370±0.77 2.502±0.43 7.157±2.57 3.623±0.67 4.023±1.14 3.686±1.52 13.151±1.74 7.263±2.48 5.516±1.89 2.017±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UG CIL_0006UG_0002 CGP 17:46910459-47010532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IGI ubiquitin ligase complex
GO:0000785 IDA chromatin
GO:0004842 IGI ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005886 IEA plasma membrane
GO:0006342 IDA chromatin silencing
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032007 ISS negative regulation of TOR signaling
GO:0033522 IDA histone H2A ubiquitination
GO:0070728 IEA leucine binding
GO:0071233 ISS cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372899 UBR2-001 protein_coding Homo_sapiens 0 5280
ENST00000372901 UBR2-002 protein_coding Homo_sapiens 0 5452
ENST00000372903 UBR2-003 protein_coding Homo_sapiens 0 1500

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