C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113337 Ubr2-202 ENSMUSG00000023977 10090 - 17:46928292-47010532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000113337
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000113337 4.032±1.77 4.320±1.19 5.525±1.14 3.340±1.23 3.959±2.07 6.541±1.99 2.974±0.49 5.024±1.02 3.432±0.86 5.531±1.60 1.872±0.35 6.760±2.83 7.209±2.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UG CIL_0006UG_0002 CGP 17:46910459-47010532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IGI ubiquitin ligase complex
GO:0000785 IDA chromatin
GO:0004842 IGI ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0006342 IDA chromatin silencing
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0032007 ISS negative regulation of TOR signaling
GO:0033522 IDA histone H2A ubiquitination
GO:0071233 ISS cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372899 UBR2-001 protein_coding Homo_sapiens 0 5430
ENST00000372901 UBR2-002 protein_coding Homo_sapiens 0 5258
ENST00000372903 UBR2-003 protein_coding Homo_sapiens 0 1338

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