C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113457 Col4a3-001 ENSMUSG00000079465 10090 + 1:82586976-82722059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeKidneyLungOvaryTestisENSMUST00000113457
Transcript ID Adipose Kidney Lung Ovary Testis
ENSMUST00000113457 1.441±0.02 28.320±1.86 24.901±0.75 1.499±0.55 2.655±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AI CIL_0004AI_0003 CGP 1:82448423-82722059
CIL_0006XR CIL_0006XR_0002 CGP 1:82586921-82752394

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 ISS integrin binding
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005587 IDA collagen type IV trimer
GO:0005604 ISS basement membrane
GO:0006919 ISS activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007155 IEA cell adhesion
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008283 ISS cell proliferation
GO:0016525 IDA negative regulation of angiogenesis
GO:0032836 IMP glomerular basement membrane development
GO:0072577 ISS endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000396578 COL4A3-001 protein_coding Homo_sapiens 0 4211
ENST00000469504 COL4A3-002 processed_transcript Homo_sapiens 0 442

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