C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dysferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113818 Dysf-002 ENSMUSG00000033788 10090 + 6:84019386-84211060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLungTestisENSMUST00000113818
Transcript ID Bladder Breast Heart Lung Testis
ENSMUST00000113818 0.759±0.04 2.184±0.61 3.123±0.47 1.289±0.00 0.118±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082S CIL_00082S_0002 VISTA 6:83890934-84492863
CIL_00083T CIL_00083T_0002 VISTA 6:83896001-84498367
CIL_0003BS CIL_0003BS_0002 CGP 6:83914353-84211060
CIL_0003BT CIL_0003BT_0002 CGP 6:84008590-84593908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001778 IMP plasma membrane repair
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005543 ISS phospholipid binding
GO:0005886 ISS plasma membrane
GO:0006906 IMP vesicle fusion
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0030315 IDA T-tubule
GO:0031410 IDA cytoplasmic vesicle
GO:0042383 IDA sarcolemma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258104 DYSF-001 protein_coding Homo_sapiens 0 5642
ENST00000394120 DYSF-003 protein_coding Homo_sapiens 0 5642
ENST00000409366 DYSF-006 protein_coding Homo_sapiens 0 3345
ENST00000409582 DYSF-011 protein_coding Homo_sapiens 0 4505
ENST00000409651 DYSF-002 protein_coding Homo_sapiens 0 5642
ENST00000409744 DYSF-005 protein_coding Homo_sapiens 0 4992
ENST00000409762 DYSF-004 protein_coding Homo_sapiens 0 6802
ENST00000410020 DYSF-007 protein_coding Homo_sapiens 0 4505
ENST00000410041 DYSF-009 protein_coding Homo_sapiens 0 6802
ENST00000413539 DYSF-021 protein_coding Homo_sapiens 0 5642
ENST00000429174 DYSF-020 protein_coding Homo_sapiens 0 3345
ENST00000468173 DYSF-014 processed_transcript Homo_sapiens 0 593
ENST00000479049 DYSF-016 processed_transcript Homo_sapiens 0 3469
ENST00000487180 DYSF-013 processed_transcript Homo_sapiens 0 579

Loading