C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113820 Arpc2-001 ENSMUSG00000006304 10090 + 1:74236497-74268209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113820 13.204±1.61 24.209±0.00 43.893±18.32 29.814±10.04 11.151±0.00 20.411±1.76 19.206±4.12 18.542±7.77 31.833±13.01 16.151±0.00 19.123±6.33 60.964±44.91 67.193±38.36 30.643±12.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WL CIL_0007WL_0002 VISTA 1:73730234-74332407
CIL_0005VM CIL_0005VM_0002 CGP 1:74191785-74268209
CIL_0005VL CIL_0005VL_0002 CGP 1:74236084-74279624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IDA endosome
GO:0005794 IEA Golgi apparatus
GO:0005885 TAS Arp2/3 protein complex
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0010592 IEA positive regulation of lamellipodium assembly
GO:0019894 IEA kinesin binding
GO:0030838 IDA positive regulation of actin filament polymerization
GO:0031252 IDA cell leading edge
GO:0035650 IEA AP-1 adaptor complex binding
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071933 IEA Arp2/3 complex binding
GO:1900026 IMP positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295685 ARPC2-001 protein_coding Homo_sapiens 0 1888
ENST00000315717 ARPC2-002 protein_coding Homo_sapiens 0 2017
ENST00000414983 ARPC2-007 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000420104 ARPC2-016 protein_coding Homo_sapiens 0 460
ENST00000420201 ARPC2-010 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000456575 ARPC2-015 protein_coding Homo_sapiens 0 481
ENST00000462034 ARPC2-013 processed_transcript Homo_sapiens 0 346
ENST00000465395 ARPC2-012 retained_intron Homo_sapiens 0 747
ENST00000470146 ARPC2-003 retained_intron Homo_sapiens 0 1214
ENST00000471355 ARPC2-008 retained_intron Homo_sapiens 0 243
ENST00000472753 ARPC2-018 retained_intron Homo_sapiens 0 292
ENST00000477992 ARPC2-004 processed_transcript Homo_sapiens 0 1155
ENST00000478612 ARPC2-005 processed_transcript Homo_sapiens 0 483
ENST00000480062 ARPC2-006 processed_transcript Homo_sapiens 0 302
ENST00000484961 ARPC2-009 processed_transcript Homo_sapiens 9e-32 141
ENST00000487321 ARPC2-014 processed_transcript Homo_sapiens 0 392
ENST00000489598 ARPC2-011 retained_intron Homo_sapiens 0 577
ENST00000491780 ARPC2-017 processed_transcript Homo_sapiens 0 571

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