C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005VM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163464-ENSG00000163466 CGP 9606 2:218162845-218254356
GeneTranscriptPositionBiotype
ENSG00000163464 (CXCR1)
chemokine (C-X-C motif) receptor 1 		ENST00000295683 (CXCR1-001) 218162845-218166995 protein_coding
ENSG00000163466 (ARPC2)
actin related protein 2/3 complex, subunit 2, 34kDa 		ENST00000295685 (ARPC2-001) 218217210-218254356 protein_coding
ENST00000315717 (ARPC2-002) 218217094-218254348 protein_coding
ENST00000414983 (ARPC2-007) 218217202-218239485 nonsense_mediated_decay
ENST00000420104 (ARPC2-016) 218217141-218234398 protein_coding
ENST00000420201 (ARPC2-010) 218217181-218238849 nonsense_mediated_decay
ENST00000456575 (ARPC2-015) 218245426-218254123 protein_coding
ENST00000462034 (ARPC2-013) 218238719-218239562 processed_transcript
ENST00000465395 (ARPC2-012) 218217455-218239195 retained_intron
ENST00000470146 (ARPC2-003) 218233000-218254108 retained_intron
ENST00000471355 (ARPC2-008) 218225919-218229303 retained_intron
ENST00000472753 (ARPC2-018) 218225919-218239017 retained_intron
ENST00000477992 (ARPC2-004) 218235341-218254108 processed_transcript
ENST00000478612 (ARPC2-005) 218217194-218245457 processed_transcript
ENST00000480062 (ARPC2-006) 218217197-218238723 processed_transcript
ENST00000484961 (ARPC2-009) 218228803-218238730 processed_transcript
ENST00000487321 (ARPC2-014) 218249592-218254110 processed_transcript
ENST00000489598 (ARPC2-011) 218217147-218235052 retained_intron
ENST00000491780 (ARPC2-017) 218217149-218235390 processed_transcript
ENSG00000224159 (HMGB1P9)
high mobility group box 1 pseudogene 9 		ENST00000429856 (HMGB1P9-001) 218200434-218201388 processed_pseudogene
CIL_0005VM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048480-ENSMUSG00000006304 CGP 10090 1:74191785-74268209
GeneTranscriptPositionBiotype
ENSMUSG00000006304 (Arpc2)
actin related protein 2/3 complex, subunit 2 		ENSMUST00000006467 (Arpc2-002) 74236517-74267987 protein_coding
ENSMUST00000113819 (Arpc2-003) 74236550-74267988 protein_coding
ENSMUST00000113820 (Arpc2-001) 74236497-74268209 protein_coding
ENSMUST00000185733 (Arpc2-004) 74236084-74236888 protein_coding
ENSMUSG00000048480 (Cxcr1)
chemokine (C-X-C motif) receptor 1 		ENSMUST00000053389 (Cxcr1-001) 74191785-74194631 protein_coding
ENSMUST00000190313 (Cxcr1-002) 74191785-74193235 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VM_0001ENSG00000163464ENST00000295683ENSG00000163466ENST00000295685ENST00000315717ENST00000414983ENST00000420104ENST00000420201ENST00000456575ENST00000462034ENST00000465395ENST00000470146ENST00000471355ENST00000472753ENST00000477992ENST00000478612ENST00000480062ENST00000484961ENST00000487321ENST00000489598ENST00000491780ENSG00000224159ENST00000429856CIL_0005VM_0002ENSMUSG00000006304ENSMUST00000006467ENSMUST00000113819ENSMUST00000113820ENSMUST00000185733ENSMUSG00000048480ENSMUST00000053389ENSMUST00000190313
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005VM_0001ENSG00000163464ENST00000295683ENSG00000163466ENST00000295685ENST00000315717ENST00000456575ENST00000470146ENST00000477992ENST00000489598ENSG00000224159ENST00000429856CIL_0005VM_0002ENSMUSG00000006304ENSMUST00000006467ENSMUST00000113819ENSMUST00000113820ENSMUSG00000048480ENSMUST00000053389ENSMUST00000190313
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163464 ENST00000295683 2.262±0.00 0.222±0.00 N/A 0.095±0.02 0.143±0.00 0.615±0.00 0.137±0.08 0.111±0.07 0.303±0.22 8.773±6.15 0.347±0.00 0.230±0.15 2.292±0.87 0.418±0.40
ENSG00000163466 ENST00000295685 N/A N/A 4.734±0.00 5.825±0.00 N/A N/A N/A N/A N/A N/A N/A 35.842±0.00 95.530±0.00 57.043±0.00
ENST00000315717 87.259±0.00 127.945±0.00 N/A 14.708±0.00 59.620±36.63 55.963±39.56 32.711±23.64 37.336±26.22 28.826±4.26 65.060±52.19 41.118±27.66 86.286±46.00 217.112±95.17 72.744±55.28
ENST00000414983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420104 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456575 N/A N/A N/A N/A N/A N/A 24.463±0.00 N/A 20.909±0.00 131.905±0.00 35.785±0.00 N/A N/A N/A
ENST00000462034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470146 N/A N/A 1.895±0.00 N/A N/A N/A N/A N/A 4.103±0.00 4.463±0.00 N/A 5.018±0.00 N/A N/A
ENST00000471355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477992 N/A 19.388±0.00 N/A N/A 4.159±0.00 5.773±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489598 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.971±0.00 N/A N/A N/A N/A
ENST00000491780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224159 ENST00000429856 N/A N/A N/A 0.020±0.00 0.041±0.00 N/A N/A N/A N/A N/A 0.019±0.00 0.019±0.00 N/A 0.054±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006304 ENSMUST00000006467 60.409±11.24 77.738±16.86 72.657±14.40 46.398±7.78 102.778±54.90 119.721±24.70 17.822±4.96 38.551±11.63 29.220±20.83 96.204±17.65 12.480±3.03 87.634±21.46 89.619±17.19 13.212±3.82
ENSMUST00000113819 10.301±0.00 N/A N/A N/A 68.309±55.56 N/A 9.291±1.53 N/A N/A N/A N/A N/A N/A 14.462±2.91
ENSMUST00000113820 13.204±1.61 24.209±0.00 43.893±18.32 29.814±10.04 11.151±0.00 20.411±1.76 19.206±4.12 18.542±7.77 31.833±13.01 16.151±0.00 19.123±6.33 60.964±44.91 67.193±38.36 30.643±12.35
ENSMUST00000185733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048480 ENSMUST00000053389 N/A N/A 0.031±0.00 0.007±0.00 0.152±0.13 N/A 0.026±0.00 0.030±0.00 0.021±0.01 0.292±0.03 N/A 0.062±0.02 0.576±0.26 0.029±0.01
ENSMUST00000190313 N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A 0.108±0.03 N/A

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