C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114159 Nacc2-002 ENSMUSG00000026932 10090 - 2:26055535-26092177 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverPlacentaENSMUST00000114159
Transcript ID Brain Breast Liver Placenta
ENSMUST00000114159 2.129±0.25 1.737±0.00 0.280±0.08 0.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F0 CIL_0001F0_0002 CGP 2:25998543-26123220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001076 IEA RNA polymerase II transcription factor binding transcription factor activity
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0004407 IEA histone deacetylase activity
GO:0005634 ISS nucleus
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008285 IEA negative regulation of cell proliferation
GO:0010608 IEA posttranscriptional regulation of gene expression
GO:0016575 IEA histone deacetylation
GO:0016581 IEA NuRD complex
GO:0034629 IEA cellular protein complex localization
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:1900477 IEA negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter
GO:1902231 IEA positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277554 NACC2-201 protein_coding Homo_sapiens 0 2187
ENST00000371753 NACC2-001 protein_coding Homo_sapiens 0 2187

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