C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NACC family member 2, BEN and BTB (POZ) domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371753 NACC2-001 ENSG00000148411 9606 - 9:136006537-136050580 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonKidneyLungOvaryPlacentaTestisENST00000371753
Transcript ID Adrenal Bladder Brain Colon Kidney Lung Ovary Placenta Testis
ENST00000371753 5.413±0.00 0.413±0.00 11.390±6.68 4.543±0.00 0.905±0.00 1.338±0.00 6.954±7.05 1.295±0.25 4.104±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F0 CIL_0001F0_0001 CGP 9:135932969-136095285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001076 IDA RNA polymerase II transcription factor binding transcription factor activity
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0004407 IDA histone deacetylase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0008284 ISS positive regulation of cell proliferation
GO:0008285 IDA negative regulation of cell proliferation
GO:0010608 IMP posttranscriptional regulation of gene expression
GO:0016575 IDA histone deacetylation
GO:0016581 IDA NuRD complex
GO:0016604 ISS nuclear body
GO:0034629 IDA cellular protein complex localization
GO:0042803 IDA protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0051260 ISS protein homooligomerization
GO:1900477 IDA negative regulation of G1/S transition of mitotic cell cycle by negative regulation of transcription from RNA polymerase II promoter
GO:1902231 IDA positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028300 Nacc2-001 protein_coding Mus_musculus 0 2187
ENSMUST00000114159 Nacc2-002 protein_coding Mus_musculus 0 2187
ENSMUST00000152133 Nacc2-003 processed_transcript Mus_musculus 0 1123
ENSMUST00000128674 Nacc2-007 processed_transcript Mus_musculus 0 401
ENSMUST00000133212 Nacc2-004 processed_transcript Mus_musculus 0 322
ENSMUST00000126921 Nacc2-008 processed_transcript Mus_musculus 0 291
ENSMUST00000140993 Nacc2-006 protein_coding Mus_musculus 0 254
ENSMUST00000149408 Nacc2-005 processed_transcript Mus_musculus 3e-31 143

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