C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114186 Smyd1-002 ENSMUSG00000055027 10090 - 6:71213942-71262253 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114186 0.332±0.13 0.082±0.02 0.079±0.00 0.116±0.05 6.714±3.78 0.070±0.04 39.226±5.33 0.498±0.26 0.247±0.31 0.980±0.66 81.020±5.75 0.157±0.08 0.102±0.02 2.029±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q7 CIL_0004Q7_0002 CGP 6:71199827-71322233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IPI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0034968 IEA histone lysine methylation
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000419482 SMYD1-001 protein_coding Homo_sapiens 0 961
ENST00000438570 SMYD1-003 protein_coding Homo_sapiens 0 392
ENST00000444564 SMYD1-002 protein_coding Homo_sapiens 0 1858
ENST00000468008 SMYD1-004 processed_transcript Homo_sapiens 0 558

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