C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET and MYND domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114188 Smyd1-005 ENSMUSG00000055027 10090 - 6:71215342-71322233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverOvaryENSMUST00000114188
Transcript ID Adipose Adrenal Breast Colon Liver Ovary
ENSMUST00000114188 0.163±0.00 0.059±0.02 0.060±0.00 0.094±0.04 0.220±0.02 0.209±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Q7 CIL_0004Q7_0002 CGP 6:71199827-71322233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006338 IPI chromatin remodeling
GO:0007507 IMP heart development
GO:0035914 IMP skeletal muscle cell differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000419482 SMYD1-001 protein_coding Homo_sapiens 0 1720
ENST00000438570 SMYD1-003 protein_coding Homo_sapiens 0 215
ENST00000444564 SMYD1-002 protein_coding Homo_sapiens 0 961
ENST00000468008 SMYD1-004 processed_transcript Homo_sapiens 0 564

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