C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and BTB domain containing 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114690 Zbtb20-011 ENSMUSG00000022708 10090 + 16:43508263-43619127 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonLiverLungOvaryPlacentaTestisENSMUST00000114690
Transcript ID Adipose Adrenal Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000114690 6.775±0.00 12.899±2.68 8.875±2.42 3.544±1.07 4.411±0.00 5.941±0.00 17.387±5.02 1.316±0.37 0.781±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WB CIL_0007WB_0002 VISTA 16:42481027-43082864
CIL_0008BK CIL_0008BK_0002 VISTA 16:42780155-43380908
CIL_0008BL CIL_0008BL_0002 VISTA 16:42821972-43423556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357258 ZBTB20-005 protein_coding Homo_sapiens 0 3814
ENST00000393785 ZBTB20-201 protein_coding Homo_sapiens 0 3814
ENST00000462705 ZBTB20-006 protein_coding Homo_sapiens 0 3814
ENST00000463890 ZBTB20-013 processed_transcript Homo_sapiens 2e-32 143
ENST00000464560 ZBTB20-002 protein_coding Homo_sapiens 0 3814
ENST00000470311 ZBTB20-019 protein_coding Homo_sapiens 0 804
ENST00000471418 ZBTB20-004 protein_coding Homo_sapiens 0 3814
ENST00000474710 ZBTB20-003 protein_coding Homo_sapiens 0 3672
ENST00000479879 ZBTB20-017 processed_transcript Homo_sapiens 0 475
ENST00000480832 ZBTB20-014 processed_transcript Homo_sapiens 6e-33 145
ENST00000481632 ZBTB20-001 protein_coding Homo_sapiens 0 3814
ENST00000482689 ZBTB20-018 protein_coding Homo_sapiens 6e-33 145
ENST00000486152 ZBTB20-016 processed_transcript Homo_sapiens 2e-32 143
ENST00000491500 ZBTB20-015 processed_transcript Homo_sapiens 6e-33 145
ENST00000492665 ZBTB20-008 processed_transcript Homo_sapiens 5e-18 95

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