C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: otoferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114747 Otof-202 ENSMUSG00000062372 10090 - 5:30367066-30461932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114747
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114747 0.028±0.00 0.150±0.00 0.255±0.00 0.163±0.05 0.016±0.01 0.018±0.00 0.007±0.00 0.057±0.02 0.019±0.00 0.660±0.26 0.051±0.00 0.179±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DO CIL_0007DO_0002 CGP 5:30281388-30461932
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_0007DN CIL_0007DN_0002 CGP 5:30367066-30484088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0007605 IEA sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0016079 IMP synaptic vesicle exocytosis
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0035612 IDA AP-2 adaptor complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272371 OTOF-001 protein_coding Homo_sapiens 0 4000
ENST00000338581 OTOF-002 protein_coding Homo_sapiens 0 4475
ENST00000339598 OTOF-003 protein_coding Homo_sapiens 0 4662
ENST00000402415 OTOF-004 protein_coding Homo_sapiens 0 2593
ENST00000403946 OTOF-005 protein_coding Homo_sapiens 0 4000
ENST00000426958 OTOF-007 protein_coding Homo_sapiens 0 446
ENST00000464574 OTOF-006 retained_intron Homo_sapiens 0 894

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