C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: otoferlin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339598 OTOF-003 ENSG00000115155 9606 - 2:26457203-26478042 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000339598
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000339598 0.355±0.00 0.347±0.00 0.041±0.02 0.188±0.00 0.029±0.00 0.036±0.00 0.335±0.26 0.065±0.04 0.014±0.00 0.134±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007DO CIL_0007DO_0001 CGP 2:26401916-26558698
CIL_0007WF CIL_0007WF_0001 VISTA 2:26419781-27023232
CIL_0007DN CIL_0007DN_0001 CGP 2:26457203-26579532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 ISS calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0007605 IEA sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0016079 ISS synaptic vesicle exocytosis
GO:0030054 IEA cell junction
GO:0030672 ISS synaptic vesicle membrane
GO:0061025 TAS membrane fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114747 Otof-202 protein_coding Mus_musculus 0 4662
ENSMUST00000133509 Otof-002 protein_coding Mus_musculus 0 4412
ENSMUST00000074171 Otof-201 protein_coding Mus_musculus 0 2564
ENSMUST00000150734 Otof-003 retained_intron Mus_musculus 0 2564
ENSMUST00000144125 Otof-001 protein_coding Mus_musculus 0 2564

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