C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114975 Prkag2-003 ENSMUSG00000028944 10090 - 5:24862748-24908469 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000114975
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000114975 23.730±9.61 23.300±0.15 1.709±0.39 3.956±0.90 7.826±0.00 4.092±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0007T7 CIL_0007T7_0002 VISTA 5:24699254-25303507
CIL_0007T1 CIL_0007T1_0002 VISTA 5:24708595-25311977
CIL_000458 CIL_000458_0002 CGP 5:24802823-25100642

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004679 TAS AMP-activated protein kinase activity
GO:0005829 TAS cytosol
GO:0006468 TAS protein phosphorylation
GO:0006633 IEA fatty acid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000129174 prkag2a-201 protein_coding Danio_rerio 0 647
ENSDART00000148618 prkag2a-001 protein_coding Danio_rerio 0 647
ENST00000287878 PRKAG2-001 protein_coding Homo_sapiens 0 1812
ENST00000392801 PRKAG2-003 protein_coding Homo_sapiens 0 1657
ENST00000418337 PRKAG2-002 protein_coding Homo_sapiens 0 1862
ENST00000476632 PRKAG2-010 protein_coding Homo_sapiens 0 725
ENST00000478989 PRKAG2-015 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000479461 PRKAG2-017 retained_intron Homo_sapiens 0 523
ENST00000483775 PRKAG2-013 retained_intron Homo_sapiens 0 398
ENST00000485183 PRKAG2-016 retained_intron Homo_sapiens 0 327
ENST00000488258 PRKAG2-006 nonsense_mediated_decay Homo_sapiens 0 678
ENST00000491938 PRKAG2-014 retained_intron Homo_sapiens 0 525
ENST00000492843 PRKAG2-004 protein_coding Homo_sapiens 0 1812
ENST00000493872 PRKAG2-012 nonsense_mediated_decay Homo_sapiens 0 442

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