C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphate cytidylyltransferase 1, choline, alpha isoform
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115140 Pcyt1a-003 ENSMUSG00000005615 10090 + 16:32431230-32472037 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonOvaryTestisENSMUST00000115140
Transcript ID Adrenal Breast Colon Ovary Testis
ENSMUST00000115140 7.906±1.75 3.105±0.00 5.984±0.68 8.134±1.39 24.250±4.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004105 ISS choline-phosphate cytidylyltransferase activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006657 ISS CDP-choline pathway
GO:0042587 IDA glycogen granule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125106 pcyt1aa-201 protein_coding Danio_rerio 0 604
ENSDART00000018524 pcyt1aa-001 protein_coding Danio_rerio 0 604
ENST00000292823 PCYT1A-001 protein_coding Homo_sapiens 0 1786
ENST00000411591 PCYT1A-009 protein_coding Homo_sapiens 0 1184
ENST00000412869 PCYT1A-014 protein_coding Homo_sapiens 0 556
ENST00000419333 PCYT1A-006 protein_coding Homo_sapiens 0 1408
ENST00000430755 PCYT1A-018 protein_coding Homo_sapiens 0 678
ENST00000431016 PCYT1A-005 protein_coding Homo_sapiens 0 1550
ENST00000431391 RP11-447L10.1-001 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000433733 PCYT1A-016 protein_coding Homo_sapiens 0 429
ENST00000438634 PCYT1A-012 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000441879 PCYT1A-011 protein_coding Homo_sapiens 0 651
ENST00000443555 PCYT1A-007 protein_coding Homo_sapiens 0 473
ENST00000444822 PCYT1A-010 nonsense_mediated_decay Homo_sapiens 0 459
ENST00000460677 PCYT1A-002 retained_intron Homo_sapiens 0 459
ENST00000460827 PCYT1A-017 retained_intron Homo_sapiens 0 405
ENST00000473978 PCYT1A-004 retained_intron Homo_sapiens 0 460
ENST00000488235 PCYT1A-015 retained_intron Homo_sapiens 0 375
ENST00000491544 PCYT1A-013 processed_transcript Homo_sapiens 0 459

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