C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonucleic acid binding protein S1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115371 Rnps1-202 ENSMUSG00000034681 10090 + 17:24414675-24425895 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115371
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115371 18.942±8.22 27.418±8.93 28.812±2.04 50.010±3.50 27.402±9.72 29.180±5.73 13.270±2.11 19.071±1.97 34.873±31.63 22.261±1.37 3.116±0.45 28.298±15.94 19.268±15.01 9.939±0.83

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043065 ISS positive regulation of apoptotic process
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0061574 ISS ASAP complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301730 RNPS1-003 protein_coding Homo_sapiens 0 1040
ENST00000320225 RNPS1-001 protein_coding Homo_sapiens 0 1040
ENST00000397086 RNPS1-005 protein_coding Homo_sapiens 0 1040
ENST00000507437 RNPS1P1-001 processed_pseudogene Homo_sapiens 0 989
ENST00000561518 RNPS1-014 protein_coding Homo_sapiens 0 948
ENST00000561718 RNPS1-004 protein_coding Homo_sapiens 0 1040
ENST00000562690 RNPS1-013 protein_coding Homo_sapiens 0 379
ENST00000564311 RNPS1-024 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000564601 RNPS1-015 protein_coding Homo_sapiens 0 562
ENST00000564764 RNPS1-020 protein_coding Homo_sapiens 0 484
ENST00000565678 RNPS1-007 protein_coding Homo_sapiens 0 1040
ENST00000565870 RNPS1-022 protein_coding Homo_sapiens 0 1007
ENST00000566180 RNPS1-017 protein_coding Homo_sapiens 0 433
ENST00000566397 RNPS1-009 protein_coding Homo_sapiens 0 1040
ENST00000566458 RNPS1-002 protein_coding Homo_sapiens 0 1079
ENST00000567147 RNPS1-027 protein_coding Homo_sapiens 0 780
ENST00000568631 RNPS1-006 protein_coding Homo_sapiens 0 1040
ENST00000569598 RNPS1-025 protein_coding Homo_sapiens 0 701
ENST00000570051 RNPS1-026 retained_intron Homo_sapiens 0 804

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