C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 16, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115828 Clec16a-002 ENSMUSG00000068663 10090 + 16:10545409-10741824 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungOvaryENSMUST00000115828
Transcript ID Breast Colon Heart Liver Lung Ovary
ENSMUST00000115828 3.186±0.55 3.002±0.63 1.873±0.21 1.239±0.45 2.795±0.25 2.397±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059N CIL_00059N_0002 CGP 16:10502531-10744878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123609 clec16a-202 protein_coding Danio_rerio 0 826
ENSDART00000123977 clec16a-203 protein_coding Danio_rerio 0 580
ENSDART00000103690 clec16a-201 protein_coding Danio_rerio 0 568
ENSDART00000156150 clec16a-001 protein_coding Danio_rerio 0 416
ENST00000409552 CLEC16A-002 protein_coding Homo_sapiens 0 1650
ENST00000409790 CLEC16A-001 protein_coding Homo_sapiens 0 2473
ENST00000494853 CLEC16A-006 retained_intron Homo_sapiens 0 1122

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