C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: BarH-like homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116615 Barx2-001 ENSMUSG00000032033 10090 - 9:31846044-31913462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116615 2.362±1.66 0.024±0.01 0.350±0.04 0.884±0.96 4.807±2.28 1.578±0.21 0.026±0.01 0.061±0.03 0.030±0.05 5.064±3.41 2.722±1.13 9.059±2.58 0.625±0.37 0.089±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001502 IDA cartilage condensation
GO:0003677 IGI DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005739 IEA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0014902 IMP myotube differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281437 BARX2-001 protein_coding Homo_sapiens 0 1086
ENST00000295900 ATXN7-001 protein_coding Homo_sapiens 0.0001 53
ENST00000474112 ATXN7-003 retained_intron Homo_sapiens 0.0001 53
ENST00000487717 ATXN7-004 protein_coding Homo_sapiens 0.0001 53
ENST00000538065 ATXN7-201 protein_coding Homo_sapiens 0.0001 53
ENST00000605151 BARX2-002 retained_intron Homo_sapiens 0 285

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