C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12390
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117897 Gm12390-001 ENSMUSG00000082008 10090 - 4:40716595-40716991 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000117897
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000117897 0.176±0.02 0.254±0.00 0.074±0.00 0.113±0.00 0.355±0.09 0.282±0.00 0.141±0.12 0.350±0.00 0.364±0.27 0.127±0.07 0.201±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061D CIL_00061D_0002 CGP 4:40682382-40737149

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000202773 RPL6-001 protein_coding Homo_sapiens 0 274
ENST00000413033 RP5-1106H14.1-001 processed_pseudogene Homo_sapiens 7e-33 143
ENST00000414898 RP11-553N16.1-001 processed_pseudogene Homo_sapiens 0 252
ENST00000424576 RPL6-002 protein_coding Homo_sapiens 0 274
ENST00000445338 RP11-295P9.2-001 processed_pseudogene Homo_sapiens 0 213
ENST00000456481 AC009245.3-001 processed_pseudogene Homo_sapiens 0 279
ENST00000468681 RP1-273G13.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000489915 RPL6P27-001 transcribed_processed_pseudogene Homo_sapiens 0 263
ENST00000546368 RPL6-006 retained_intron Homo_sapiens 3e-36 158
ENST00000548343 RPL6-009 protein_coding Homo_sapiens 0 211
ENST00000549562 RPL6-010 retained_intron Homo_sapiens 0 231
ENST00000549847 RPL6-008 protein_coding Homo_sapiens 0 274
ENST00000550566 RPL6-017 protein_coding Homo_sapiens 0 274
ENST00000551041 RPL6-003 retained_intron Homo_sapiens 0 231
ENST00000551291 RPL6-012 protein_coding Homo_sapiens 0 267
ENST00000552455 RPL6-015 retained_intron Homo_sapiens 0 274
ENST00000553213 RPL6-016 protein_coding Homo_sapiens 0 257

Loading