C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137074-ENSG00000086061 CGP 9606 9:32972606-33039907
GeneTranscriptPositionBiotype
ENSG00000086061 (DNAJA1)
DnaJ (Hsp40) homolog, subfamily A, member 1 		ENST00000330899 (DNAJA1-001) 33025211-33039907 protein_coding
ENST00000465677 (DNAJA1-002) 33034260-33037332 processed_transcript
ENST00000495015 (DNAJA1-003) 33025286-33038726 processed_transcript
ENSG00000137074 (APTX)
aprataxin 		ENST00000309615 (APTX-201) 32972607-33001612 protein_coding
ENST00000379812 (APTX-030) 32984631-33001607 protein_coding
ENST00000379813 (APTX-202) 32973396-33001612 protein_coding
ENST00000379817 (APTX-011) 32972618-32990088 protein_coding
ENST00000379819 (APTX-003) 32972749-33001604 protein_coding
ENST00000379825 (APTX-002) 32972606-33001628 protein_coding
ENST00000397172 (APTX-021) 32972616-33001607 protein_coding
ENST00000436040 (APTX-203) 32972607-33001576 protein_coding
ENST00000460940 (APTX-016) 32972618-32990088 nonsense_mediated_decay
ENST00000460945 (APTX-022) 32987543-33025168 processed_transcript
ENST00000463596 (APTX-007) 32973376-33001522 protein_coding
ENST00000464632 (APTX-018) 32984659-33001619 nonsense_mediated_decay
ENST00000465003 (APTX-001) 32972618-32990088 nonsense_mediated_decay
ENST00000467331 (APTX-012) 32972618-32990088 nonsense_mediated_decay
ENST00000468275 (APTX-017) 32973165-32997331 protein_coding
ENST00000472896 (APTX-013) 32972618-32990088 nonsense_mediated_decay
ENST00000473221 (APTX-025) 32984631-33001641 protein_coding
ENST00000473270 (APTX-023) 33015888-33025110 processed_transcript
ENST00000474658 (APTX-028) 32973242-33001579 nonsense_mediated_decay
ENST00000476858 (APTX-006) 32973376-33001641 protein_coding
ENST00000477119 (APTX-026) 32984772-33001612 protein_coding
ENST00000478279 (APTX-019) 32984659-33001619 nonsense_mediated_decay
ENST00000479656 (APTX-004) 32972763-32997360 nonsense_mediated_decay
ENST00000480031 (APTX-027) 32984715-33001597 nonsense_mediated_decay
ENST00000482687 (APTX-015) 32972618-32990088 nonsense_mediated_decay
ENST00000483148 (APTX-014) 32972618-32990088 nonsense_mediated_decay
ENST00000485479 (APTX-010) 32972618-32990088 nonsense_mediated_decay
ENST00000486724 (APTX-032) 32980388-32987762 processed_transcript
ENST00000489583 (APTX-024) 33019954-33024987 processed_transcript
ENST00000494649 (APTX-009) 32972616-33001521 nonsense_mediated_decay
ENST00000494973 (APTX-029) 32987777-33001628 retained_intron
ENST00000495360 (APTX-008) 32973407-33025112 nonsense_mediated_decay
ENST00000496030 (APTX-031) 32985989-32988134 retained_intron
ENSG00000236184 (TCEA1P4)
transcription elongation factor A (SII), 1 pseudogene 4 		ENST00000415066 (TCEA1P4-001) 32979560-32980403 processed_pseudogene
CIL_00061D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028411-ENSMUSG00000028410 CGP 10090 4:40682382-40737149
GeneTranscriptPositionBiotype
ENSMUSG00000028409 (Smu1)
smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) 		ENSMUST00000030117 (Smu1-001) 40736542-40757923 protein_coding
ENSMUST00000130503 (Smu1-002) 40743584-40757883 processed_transcript
ENSMUST00000137415 (Smu1-004) 40755700-40757398 processed_transcript
ENSMUST00000150574 (Smu1-003) 40754376-40757831 processed_transcript
ENSMUSG00000028410 (Dnaja1)
DnaJ (Hsp40) homolog, subfamily A, member 1 		ENSMUST00000030118 (Dnaja1-001) 40722480-40734964 protein_coding
ENSMUST00000125442 (Dnaja1-009) 40722945-40728164 protein_coding
ENSMUST00000126020 (Dnaja1-005) 40723362-40724111 processed_transcript
ENSMUST00000129204 (Dnaja1-002) 40722922-40733900 processed_transcript
ENSMUST00000137246 (Dnaja1-004) 40722930-40731759 protein_coding
ENSMUST00000137476 (Dnaja1-007) 40722559-40730193 processed_transcript
ENSMUST00000139406 (Dnaja1-003) 40722150-40723795 processed_transcript
ENSMUST00000148976 (Dnaja1-008) 40724049-40732263 processed_transcript
ENSMUST00000149794 (Dnaja1-006) 40723117-40726180 protein_coding
ENSMUST00000164233 (Dnaja1-201) 40722922-40737149 protein_coding
ENSMUSG00000028411 (Aptx)
aprataxin 		ENSMUST00000030119 (Aptx-001) 40682382-40703194 protein_coding
ENSMUST00000068125 (Aptx-004) 40682382-40702914 protein_coding
ENSMUST00000108103 (Aptx-003) 40684924-40703162 protein_coding
ENSMUST00000128810 (Aptx-006) 40691003-40694507 processed_transcript
ENSMUST00000129021 (Aptx-002) 40686242-40703187 nonsense_mediated_decay
ENSMUST00000155710 (Aptx-005) 40695020-40702716 nonsense_mediated_decay
ENSMUSG00000082008 (Gm12390)
predicted gene 12390 		ENSMUST00000117897 (Gm12390-001) 40716595-40716991 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061D_0001ENSG00000086061ENST00000330899ENST00000495015ENSG00000137074ENST00000309615ENST00000379813ENST00000379817ENST00000379819ENST00000379825ENST00000397172ENST00000460940ENST00000460945ENST00000463596ENST00000467331ENST00000468275ENST00000476858ENST00000479656ENST00000480031ENST00000482687ENST00000494649ENST00000495360ENST00000496030ENSG00000236184ENST00000415066CIL_00061D_0002ENSMUSG00000028409ENSMUST00000030117ENSMUSG00000028410ENSMUST00000030118ENSMUST00000125442ENSMUST00000129204ENSMUST00000137246ENSMUST00000148976ENSMUSG00000028411ENSMUST00000030119ENSMUST00000068125ENSMUST00000108103ENSMUST00000129021ENSMUSG00000082008ENSMUST00000117897
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000086061 ENST00000330899 22.854±0.00 21.428±0.00 3.223±0.00 33.507±17.79 19.135±6.27 33.588±27.72 9.697±6.69 34.212±21.48 15.952±6.25 39.400±27.73 6.169±4.21 51.907±26.89 68.651±19.57 118.371±38.20
ENST00000465677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495015 15.935±0.00 18.070±0.00 N/A 48.316±0.00 21.348±0.00 N/A N/A 41.812±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000137074 ENST00000309615 1.006±0.00 N/A N/A 9.021±0.00 1.879±0.00 2.681±0.00 0.756±0.00 3.788±0.00 2.106±0.00 N/A N/A 3.466±0.92 1.218±0.00 N/A
ENST00000379812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379813 N/A N/A N/A N/A N/A N/A 0.378±0.00 N/A N/A 4.506±0.00 N/A N/A N/A N/A
ENST00000379817 N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000379819 1.061±0.00 4.873±0.00 N/A 0.829±0.00 1.814±0.00 N/A 1.616±0.00 3.756±0.00 N/A N/A N/A 2.480±1.28 2.054±0.48 N/A
ENST00000379825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.711±0.00 N/A N/A
ENST00000397172 1.005±0.00 N/A N/A N/A 1.751±0.00 1.114±0.00 N/A N/A N/A N/A 1.892±0.00 0.938±0.00 N/A N/A
ENST00000436040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460940 N/A N/A N/A N/A 1.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460945 N/A N/A N/A N/A N/A N/A N/A 2.026±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.186±0.00
ENST00000464632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.993±0.00 N/A N/A
ENST00000468275 1.394±0.00 N/A N/A N/A N/A N/A 1.151±0.00 N/A N/A N/A N/A 9.387±0.00 7.765±0.00 6.879±0.00
ENST00000472896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476858 2.304±0.00 8.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.470±0.00 N/A N/A N/A
ENST00000477119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479656 N/A N/A N/A N/A N/A 2.450±0.00 N/A N/A 0.721±0.00 N/A N/A 5.389±0.00 1.623±0.00 6.748±0.00
ENST00000480031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.975±0.00 N/A N/A
ENST00000482687 N/A N/A N/A N/A N/A N/A N/A 1.815±0.00 N/A N/A N/A N/A N/A N/A
ENST00000483148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494649 N/A N/A N/A N/A 1.193±0.00 N/A N/A N/A 0.852±0.00 1.357±0.00 N/A N/A N/A N/A
ENST00000494973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495360 N/A N/A N/A 0.919±0.00 N/A 1.809±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.013±0.00 N/A N/A
ENSG00000236184 ENST00000415066 N/A N/A N/A N/A 2.024±0.00 N/A N/A N/A N/A 2.042±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028409 ENSMUST00000030117 21.103±3.40 10.231±1.21 22.681±11.79 27.474±9.36 16.588±2.77 12.885±2.20 10.322±0.94 19.114±2.06 23.921±9.83 17.962±1.36 13.331±2.64 25.181±3.31 41.259±10.63 14.874±3.37
ENSMUST00000130503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028410 ENSMUST00000030118 7.335±1.60 3.224±0.54 10.186±3.79 24.766±12.63 4.206±0.69 2.867±0.67 2.904±0.15 11.015±2.85 9.053±2.19 5.854±1.67 4.309±1.04 12.339±7.03 30.449±14.62 9.989±3.51
ENSMUST00000125442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 61.484±0.00
ENSMUST00000126020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129204 3.156±0.00 N/A 3.232±0.00 9.010±1.71 2.231±0.00 N/A N/A N/A N/A 2.580±0.00 N/A 7.255±2.97 5.419±0.00 N/A
ENSMUST00000137246 N/A N/A N/A 28.818±0.00 N/A N/A N/A N/A N/A N/A N/A 51.659±8.13 78.971±33.03 52.984±0.00
ENSMUST00000137476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148976 N/A N/A N/A 22.867±0.00 N/A N/A N/A N/A N/A N/A N/A 36.989±0.00 51.757±32.80 10.716±0.00
ENSMUST00000149794 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028411 ENSMUST00000030119 0.496±0.07 N/A 1.379±0.27 1.604±0.46 0.494±0.39 0.449±0.26 0.645±0.27 0.292±0.00 0.383±0.09 0.502±0.00 1.309±0.45 0.743±0.35 0.532±0.13 N/A
ENSMUST00000068125 0.406±0.10 0.527±0.07 0.385±0.00 0.956±0.22 0.371±0.09 0.245±0.00 N/A 0.617±0.26 0.330±0.15 N/A N/A 0.920±0.56 0.688±0.29 N/A
ENSMUST00000108103 0.819±0.05 2.133±0.20 N/A N/A 1.299±0.48 1.502±0.20 0.714±0.01 0.929±0.30 0.493±0.16 1.995±0.36 N/A 2.446±0.60 0.935±0.08 N/A
ENSMUST00000128810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129021 4.804±0.88 0.946±0.22 6.109±0.78 7.852±2.04 2.774±0.83 1.144±0.49 3.116±0.20 3.403±0.19 2.530±0.67 2.914±0.54 5.307±0.51 4.147±3.81 8.944±1.65 63.036±40.69
ENSMUST00000155710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082008 ENSMUST00000117897 0.176±0.02 0.254±0.00 0.074±0.00 0.113±0.00 N/A 0.355±0.09 0.282±0.00 N/A 0.141±0.12 0.350±0.00 N/A 0.364±0.27 0.127±0.07 0.201±0.06

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